Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone11ag1102 | ATGTCGGACGATCAGCCTACGATCGCCGGAAAGCGCAGGAACCGAGGACCGGAGGCGTCTGCTCGCAGTGAAGCTCTAGAAAGACTAAAAGCCAAACTAAATGGTGGTCGCCGGTCGGATTCCGGCGGAATCCAATTCAAGATGGAGGATCCCGTTTATGATTCCATTCCTGAGGATGAATACAATGCTCTTGTCGCCAAGCGTAGGGAAGAAGTCCGAGGGTTTATTGTTGACGACGATGGTCTAGGGTACGGGGATGAAGGCGAGGAAGAGGATTGGTCCAAGGCTGATCTTCCTCCTTCGTCTGATGAATCTGACGGCGGATTTGAAAGGTCGAAGAAGAAGAAGAAGAAGGAGGAGAAGGAACCGCGGCCTAAGAAGCCATCTGCTGCTACTGCTTCTCTCTCAGCAGCGGCGGCAAGTATGGGAAAGCAGAGGCTTTGTTCGATGTTTACTTCGTCAGCTTTCAAGGAGGTTAGTGGTAGAAATGGTAAGCCAAAGATTTTAGCTTGCAATAGTATAGTTGATGATATAATTGCAGAGTTTGCTCCTGATGAGGCTGATAGAGAGAAACGTAGGAGGGGCCAAATTGGTGCTTCTGTACCATTTATGGCTCCAGAAAGCGAGAAATCATCTGTTCGGAGTGTCAATATGGCAATTCCGAAAATTGAAATAATCAGAAAAATTGAAAATGGCGATCTGGAAGTCCCTAGGTTCTTTGTTAATGCTCATTCTGAATTGGATTATGGGCAAGGTGGTTTAGACGTGAAGGAAAAGACAGAAAATGAAGATTTTGAGGATAGGAAAGACGTAAATTCTGTAGGGGGTCATGAGCCTATTGTGCAGTCAAATGAAACTTCAACCAAAAATGGTGGAATTGAGGAGAAGCTGCCCAGTATTGTAGAAATAAAGTCAGAACCAGTGGTTGCAGAAGGCAGTTATACTTTAAATGCGAAAATAAAAGAAAAAAATGATCCGGCATTGAGTGCTACTGCTGATTGGCAAGCATTGAGGTGTGGAGGCAACACTGATGCTGCTGTTGCAGAAGTTCGTAGTGGTATGAATGTTGATGAAAAAACAGATTTTGATTTGGATTCAGATGGGTCGCTGCCGTTCTACCTAATCGATGCTCATGAGGAGTTCTATGGTACTAATATGGGGACCATATATCTTTTCGGGAAGGTCAAAGCAGGGGGTACATATCACAGTTGTGCCGTGGTCGTCAAGAACGCGCAAAGGTGTCTCTATGCAATTCCAAACGGTTCTTTGCTTCACTCTGATGAGATGCTGAAGCTTCAGAAAGATGCTGCTGAGTCTCAAATCTCTCCCACGGATATGCGTACAAAGCTGCAGGAATTGACATCAGGATTAAAGAGTGAAGTAACAAAAAAGTTGTTGGATCTCAATGTTTCAACTTTTAGCATGACTCCTGTGAAGAGGAGTTATGCATTTGAACGACTTGACATTCCTGTGGGGGAAAATTATGTACTTAAGATCAATTATCCATTCAAGGACCCCCCACTTCCATCGGATCTGAAAGGAGAGTCATTCTGCGCTCTCTTAGGAACTCATCGCAGCGCTTTGGAACTTTTTCTTGTTCAGAGAAAGATAAAGGGACCTTCCTGGCTATCAATTTCTAAATTTTATGCTTGCCCTGCTACTCAACAGGTAAGCTGGTGCAAATTTGAGGTTACTGTTGACTCTCCAAAAGATATTCAAGTTTCAACCTCATCGAACATGACAATAGAAGTTCCTCCAGTGGTTGTTGCTGCAATAAATTTGAAGACTGTCATTAATGAAAAGCAGAATGTTAATGAAATTGTCTCTGCATCTGTTATTTGTTGTCGCAAAGCTAAGATTGACACTCCAATGGTGGCCTCGGAATGGAAGAGACCGGGTATGCTGAGCCATTTTACTGTTGTCCGGAAGCTTGATGGAGGTATATATCCTACGGGGTTCTCTACAGAGGCTAAAGATAGAAACTCAAAAGCTGGCTCAAATGTGTTAATAGTCGAGAGCAATGAGAGGGCATTGTTGAACCGTCTGATGCTTGAATTACACCAACTGGATAGTGATGTTTTGGTGGGACATAATATATCTGGGTTTGACCTGGATGTCCTTCTCCACAGAGCCCAGTCTTGCAGAGTTCCCAGTAATATGTGGTCGAGAATAGGTCGCCTGAAGCGGTCTGTTATGCCTAAGATGGGAAAAGGAAGCAACATTTTTGGTTCTGGAGCAAGTCCAGGAATCATGTCTTGCATTGCTGGTCGTCTCTTGTGTGACACCTACTTGTGTGCCCGTGAACTTTTGAAAGAGGTCAGTTACTCTTTGACACAATTAGCTAAGACTCAGCTGAAGAAGGATCGCATGGAGATTACTCCGCATGATATTCCTGGAATGTTCCAAGCAACAGATTCCCTTGTTCAACTTATTGAATATGGTGAGACAGATGCATGGTTGTCTATGGAACTCATGTTTCATTTGAGTATCCTTCCCCTCACGCGGCAGCTGACTAATATCAGCGGTAACCTCTGGGGCAAAACCTTACAAGGTGCTAGGGCTCAAAGAGTGGAATATCTTTTACTTCATGCATTTCATGCTAAGAAATATATTGTACCGGATAAAATTTCATCCCATATGAAAGAAACAAAGCCTACAAAGCGGAGAATAAATCATGGTTTTGACGAGAGAAATGTTGATGAGTTGGAAATGGATCAAGCAAATTTTGATAATGATGCTCCACATGCGGCTGATGGGAAAGGGAAAAAAGGACCTTCCTATGCAGGTGGACTGGTCTTGGAACCAAAAAGAGGCTTATATGATAAGTATATATTGCTTCTGGACTTCAACAGTCTTTACCCTTCTATCATACAGGAGTACAATATATGCTTCACAACAGTTGAAAGATCTCCAGATGGTCTGGTTCCTCATTTGCCATCTAGTAAAACGACTGGAATTCTACCTGAGTTGCTAAAAAATCTGGTCCAGAGGAGGAGGATGGTGAAGTCATGGATGAAGACTGCATCCGGTCTCAAGGTCCAGCAACTTGACATTCAACAGCAAGCACTGAAGCTCACTGCAAATAGTATGTATGGGTGTTTGGGATTTTCGAATTCCCGATTTTATGCAAAGCCACTGGCAGAGCTTATTACCCTACAGGGAAGGGAGATTCTGCAAAGCACTGTTGACCTTGTCCAAAATAGTCTGAATTTGGAGGTAATTTATGGCGACACAGATTCAATTATGATTCATAGTGGACTAGATGATATAGCCAAGGCAAAAGCAATTGCAGGGAAAGTCATTCAAGAGGTTAACAAGAAGTACAGGTGTTTAGAAATTGATCTTGATGGTCTGTACAAGAGAATGCTGCTTCTCAAGAAAAAGAAATATGCTGCTGTAAAGGTCCAGTTCAAGGATGGGACACCGTATGAGGTTATTGAACGTAAAGGCCTTGATATGGTTCGGCGTGACTGGAGCTTATTGTCAAAGGAAATAGGAGATTTCTGCCTCACTCAAATATTGTCTGGAGGATCATGTGAGGATGTCGCCGAATCAATTCACAACTCTCTAATGAAGATTCAAGAGGAAATGAGGAATGGACAAGTGGCACTTGAGAAATATATCATCACTAAGACATTGACTAAGCCACCTGAAGCCTATCCTGATGCTAGAAACCAACCACATGTTCAAGTGGCACAAAGGTGGAAGCAGATGGGATACTCATCTGGTTGCTCTGTTGGTGATACCATCCCTTACGTAATTTGCTGCGAGCAGGGATCTACTTCAGTTAATTCGACAGGGATTGCTCAACGTGCTCGACATCCTGATGAATTAAAAAGAGAAGATGGAAAATGGCTGATTGACATTGATTACTATCTGTCACAGCAGATTCATCCAGTGGTATCTCGTCTCTGCGCTTCAATTCAGGGTACAAGTCCAGAACGCTTGGCCGATTGTTTGGGGCTGGACTCATCTAAGTTCCAACATAAATCAAGTGAAGCTGCTAGCATTGATCATTCAAGTTCACTCTTATTTTCTCTGGATGACAAGGAAAGATATCGGGGCTGTGAACCTCTGAAATTGTCATGCCCCAGCTGTTCTGGCACTTTTGAGTGTCCGCCTATCTTTGATTCTGTTTGTAGGGTAATCAGTGGAAAGGCAAGACCAAATATAGATGAACACATAAGCAACATTTGGAGCCAATCTCGTTGTCCTAAATGCCCAGAGGGAGGCAACGAGGGTAGAATATCTCCCGGAATTATTGCAAACCAGGTCAAAAGGCAAGCAGAGGGGTTTGTTACAATGTATTATAATGGGTCAATGACGTGTGATGATGAAACTTGCAAATTCACTACCCGAGGCCTCAATCTTCGACTTCTTGGTGATTCGGAGAAAGGAACTGTTTGTCCAAACTATCCCCGATGCAATGGCCGTCTCATTAGAAAGTACACTGAAGCAGATTTATATAAGCAGCTAGCATTTTTCTGCCATGTTCTAGATACCGCGCGCTGTATGGAAAAGGTAGAGGTTAGCGTTAGGCCATCAATAGAGAAAGAGTTGGCTAAGATTCGGCCTATGGTCGATTTAGCTGCATCGACAATTCAAAATATTAGAGACCGCAGTGCATTTGGGTGGATCCAGTTGCAGGATCTTACTGTCACAGTTTGA | 4668 | 43.32 | MSDDQPTIAGKRRNRGPEASARSEALERLKAKLNGGRRSDSGGIQFKMEDPVYDSIPEDEYNALVAKRREEVRGFIVDDDGLGYGDEGEEEDWSKADLPPSSDESDGGFERSKKKKKKEEKEPRPKKPSAATASLSAAAASMGKQRLCSMFTSSAFKEVSGRNGKPKILACNSIVDDIIAEFAPDEADREKRRRGQIGASVPFMAPESEKSSVRSVNMAIPKIEIIRKIENGDLEVPRFFVNAHSELDYGQGGLDVKEKTENEDFEDRKDVNSVGGHEPIVQSNETSTKNGGIEEKLPSIVEIKSEPVVAEGSYTLNAKIKEKNDPALSATADWQALRCGGNTDAAVAEVRSGMNVDEKTDFDLDSDGSLPFYLIDAHEEFYGTNMGTIYLFGKVKAGGTYHSCAVVVKNAQRCLYAIPNGSLLHSDEMLKLQKDAAESQISPTDMRTKLQELTSGLKSEVTKKLLDLNVSTFSMTPVKRSYAFERLDIPVGENYVLKINYPFKDPPLPSDLKGESFCALLGTHRSALELFLVQRKIKGPSWLSISKFYACPATQQVSWCKFEVTVDSPKDIQVSTSSNMTIEVPPVVVAAINLKTVINEKQNVNEIVSASVICCRKAKIDTPMVASEWKRPGMLSHFTVVRKLDGGIYPTGFSTEAKDRNSKAGSNVLIVESNERALLNRLMLELHQLDSDVLVGHNISGFDLDVLLHRAQSCRVPSNMWSRIGRLKRSVMPKMGKGSNIFGSGASPGIMSCIAGRLLCDTYLCARELLKEVSYSLTQLAKTQLKKDRMEITPHDIPGMFQATDSLVQLIEYGETDAWLSMELMFHLSILPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKISSHMKETKPTKRRINHGFDERNVDELEMDQANFDNDAPHAADGKGKKGPSYAGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLVPHLPSSKTTGILPELLKNLVQRRRMVKSWMKTASGLKVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNSLNLEVIYGDTDSIMIHSGLDDIAKAKAIAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGTPYEVIERKGLDMVRRDWSLLSKEIGDFCLTQILSGGSCEDVAESIHNSLMKIQEEMRNGQVALEKYIITKTLTKPPEAYPDARNQPHVQVAQRWKQMGYSSGCSVGDTIPYVICCEQGSTSVNSTGIAQRARHPDELKREDGKWLIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQHKSSEAASIDHSSSLLFSLDDKERYRGCEPLKLSCPSCSGTFECPPIFDSVCRVISGKARPNIDEHISNIWSQSRCPKCPEGGNEGRISPGIIANQVKRQAEGFVTMYYNGSMTCDDETCKFTTRGLNLRLLGDSEKGTVCPNYPRCNGRLIRKYTEADLYKQLAFFCHVLDTARCMEKVEVSVRPSIEKELAKIRPMVDLAASTIQNIRDRSAFGWIQLQDLTVTV | 1555 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 8588212 | 8599204 | - | Conep11aG0113700.1 | Cone11ag1102 | 448354 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone11ag1102 | 1555 | Gene3D | Palm domain of DNA polymerase | 914 | 1138 | IPR023211 | - | |
| Cone11ag1102 | 1555 | FunFam | DNA polymerase | 985 | 1034 | - | - | |
| Cone11ag1102 | 1555 | MobiDBLite | consensus disorder prediction | 94 | 127 | - | - | |
| Cone11ag1102 | 1555 | SUPERFAMILY | DNA/RNA polymerases | 869 | 1323 | IPR043502 | - | |
| Cone11ag1102 | 1555 | Gene3D | - | 412 | 538 | - | - | |
| Cone11ag1102 | 1555 | Pfam | DNA polymerase alpha subunit p180 N terminal | 26 | 93 | IPR024647 | - | |
| Cone11ag1102 | 1555 | Pfam | DNA polymerase family B, exonuclease domain | 525 | 778 | IPR006133 | - | |
| Cone11ag1102 | 1555 | Coils | Coil | 1101 | 1121 | - | - | |
| Cone11ag1102 | 1555 | PRINTS | DNA-directed DNA-polymerase family B signature | 1073 | 1081 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
| Cone11ag1102 | 1555 | PRINTS | DNA-directed DNA-polymerase family B signature | 944 | 957 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
| Cone11ag1102 | 1555 | PRINTS | DNA-directed DNA-polymerase family B signature | 1020 | 1032 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
| Cone11ag1102 | 1555 | FunFam | DNA polymerase | 412 | 538 | - | - | |
| Cone11ag1102 | 1555 | CDD | DNA_polB_alpha_exo | 585 | 836 | - | - | |
| Cone11ag1102 | 1555 | MobiDBLite | consensus disorder prediction | 76 | 138 | - | - | |
| Cone11ag1102 | 1555 | SUPERFAMILY | Ribonuclease H-like | 367 | 873 | IPR012337 | - | |
| Cone11ag1102 | 1555 | Gene3D | - | 585 | 898 | IPR036397 | GO:0003676(InterPro) | |
| Cone11ag1102 | 1555 | Pfam | DNA Polymerase alpha zinc finger | 1346 | 1551 | IPR015088 | GO:0003887(InterPro)|GO:0006260(InterPro) | |
| Cone11ag1102 | 1555 | Gene3D | - | 1151 | 1336 | IPR042087 | - | |
| Cone11ag1102 | 1555 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
| Cone11ag1102 | 1555 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Cone11ag1102 | 1555 | Gene3D | Helix hairpin bin | 989 | 1033 | - | - | |
| Cone11ag1102 | 1555 | PANTHER | DNA POLYMERASE ALPHA CATALYTIC SUBUNIT | 15 | 1553 | - | GO:0003682(PANTHER)|GO:0003688(PANTHER)|GO:0003697(PANTHER)|GO:0003887(PANTHER)|GO:0005658(PANTHER)|GO:0006272(PANTHER)|GO:0006273(PANTHER)|GO:1902975(PANTHER) | |
| Cone11ag1102 | 1555 | SMART | polmehr3 | 585 | 1087 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
| Cone11ag1102 | 1555 | Gene3D | - | 372 | 571 | - | - | |
| Cone11ag1102 | 1555 | MobiDBLite | consensus disorder prediction | 261 | 292 | - | - | |
| Cone11ag1102 | 1555 | Gene3D | DNA Polymerase alpha, zinc finger | 1346 | 1540 | IPR038256 | - | |
| Cone11ag1102 | 1555 | FunFam | DNA polymerase | 1346 | 1541 | - | - | |
| Cone11ag1102 | 1555 | FunFam | DNA polymerase | 585 | 899 | - | - | |
| Cone11ag1102 | 1555 | Pfam | DNA polymerase family B | 844 | 1308 | IPR006134 | GO:0000166(InterPro)|GO:0003677(InterPro) | |
| Cone11ag1102 | 1555 | FunFam | DNA polymerase | 1151 | 1336 | - | - | |
| Cone11ag1102 | 1555 | MobiDBLite | consensus disorder prediction | 277 | 292 | - | - | |
| Cone11ag1102 | 1555 | NCBIfam | DNA polymerase (pol2) | 50 | 1305 | - | - | |
| Cone11ag1102 | 1555 | CDD | POLBc_alpha | 920 | 1323 | IPR045846 | GO:0003887(InterPro)|GO:1902975(InterPro) | |
| Cone11ag1102 | 1555 | ProSitePatterns | DNA polymerase family B signature. | 1075 | 1083 | IPR017964 | GO:0000166(InterPro)|GO:0003676(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone11ag1102 | Cone-Chr11:8588212 | Cone9ag1229 | Cone-Chr9:8954456 | 4.94E-44 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone11ag1102 | K02320 | - | csv:101211201 | 2234.53 |