Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag1117 ATGGATCGGAAGTTGTATGACAAGTTGTACAAGGCAAAGCCATTTCTGAGTGTGATTCTTCTTCAGTTTGGTTATGCTGTTTTGTTCATCATCGTGAAGATTGCTCTAAACAAAGGAATGAACCCTCGCGTTCTTGTCGTTTATCGGCACGTCGTTGCTTTTTGCGTTATTGCTCCGTTCGCCCTCATATTCGAAAGAAAAGTAAGGCCGAAGATGACTCTTCCCATTTTTGCCAAGATTATGCTGCTGGGCTTACTAGAGCCTGTAATGGACCAGAACTTGTACTACATTGGAATGAAGTATACAACAGCAACTTTCACATCAGCTATGTGCAATATTCTTCCTGCCTTTGCATTTTTAATGGCTTGGGCTTGCAGGCTTGAGAAGGTAAGTATAAGGAAATTTCATAGCCAGGCAAAGATAATGGGGACGTTAGTGACAGTAGGAGGAGCCATGCTTATGTCTCTGTTTAATGGTCCTGTCCTCAATTTGCCTTGGACAAAAAGAAACCTCCATCATCAGTCTTCTACTTCTGCTGCAAACAGGCAGGATCCCATCAAAGGTGCTCTCTTCATCGGCACCGGCTGTGTTTGCTGGTCTGCTTTCATCATCCTTCAGGCAATTACTCTAAAAGCATACCCGGCAGAGCTTTCTTTAACAGCACTGATATGCTTGATGGGTGCAATGGAAGGCAGTGTACTAGCTCTAGCGGTTGAATGGAGAAATCCTTCTGTCTGGTCCCTTTACTTCGATTCCAGACTAGTAGCTATCATCTGCAGTGGAGTAATAGGTTCGGGTTTTGCCTTCTACATTCAAGGAGTGGTTATGAAGCAAAAAGGACCTGTTTTTGTCACTGCCTTCAACCCTCTAAGCATGGTTATGGTTGCAATTCTGAGCTCCTTCATCTTATCCGAAATTATGTACTTAGGAAGAGTAATTGGAGCAATTGTGATTGTAACTGGCTTGTACATAGTGTTGTGGGGAAAGAGCAAGGATCAAATAGCACCCAAGAAGGGCATGGAGAGGGTGACGTCATCAGAGAGAGAAATGACAATCACAAATGAGAGTGATAATGATATTACTATCAATGCTTCTGATAATAATTTAGTGGCCATTGATAATGTTAATGAAACAAAGCTAGAATTAGATTCTGGTTAA 1158 42.23 MDRKLYDKLYKAKPFLSVILLQFGYAVLFIIVKIALNKGMNPRVLVVYRHVVAFCVIAPFALIFERKVRPKMTLPIFAKIMLLGLLEPVMDQNLYYIGMKYTTATFTSAMCNILPAFAFLMAWACRLEKVSIRKFHSQAKIMGTLVTVGGAMLMSLFNGPVLNLPWTKRNLHHQSSTSAANRQDPIKGALFIGTGCVCWSAFIILQAITLKAYPAELSLTALICLMGAMEGSVLALAVEWRNPSVWSLYFDSRLVAIICSGVIGSGFAFYIQGVVMKQKGPVFVTAFNPLSMVMVAILSSFILSEIMYLGRVIGAIVIVTGLYIVLWGKSKDQIAPKKGMERVTSSEREMTITNESDNDITINASDNNLVAIDNVNETKLELDSG 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8677300 8679271 - Conep11aG0115200.1 Cone11ag1117 448369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag1117 385 PANTHER WAT1-RELATED PROTEIN 18 344 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cone11ag1117 385 SUPERFAMILY Multidrug resistance efflux transporter EmrE 245 330 - -
Cone11ag1117 385 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 158 - -
Cone11ag1117 385 Pfam EamA-like transporter family 187 326 IPR000620 GO:0016020(InterPro)
Cone11ag1117 385 Pfam EamA-like transporter family 16 154 IPR000620 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1117 Cone-Chr11:8677300 Cone4ag1395 Cone-Chr4:11243721 1.18E-122 dispersed
Cone10ag0293 Cone-Chr10:1389563 Cone11ag1117 Cone-Chr11:8677300 2.33E-129 wgd
Cone11ag1117 Cone-Chr11:8677300 Cone13ag1320 Cone-Chr13:9780093 6.93E-130 wgd
Cone11ag1117 Cone-Chr11:8677300 Cone18ag0463 Cone-Chr18:2241742 7.70E-242 wgd
Cone11ag1117 Cone-Chr11:8677300 Cone19ag1306 Cone-Chr19:8813105 3.56E-136 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag1117 - - - 0.0