Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag1137 ATGGCCACAATGTCTCTGCTCTGCATTATCTCTTTGACTTCATTCCTAACACTTGTTAACGCCAAAATTCAAGGTGTTTACTCCGCCGGACAGTGGGAAACCGCCCACGCTACCTTCTATGGTGGCAGCGACGCCTCCGGAACAATGGGCGGTGCTTGTGGATATGGAAACCTGTACAGCCAAGGCTACGGCGTAAACACGGCGGCTCTGAGCACTGCCCTCTTCAACAACGGTCTGAGCTGCGGCGCATGCTTCGAAATCAAGTGCGCTAGTGACCCAAAATGGTGCCATTCCGGCAGCCCCTCCATCTTGGTCACCGCCACCAACTTCTGCCCACCTAACTACGCTCTTCCTAGCGACAATGGGGGGTGGTGCAACCCGCCCCGGCCTCATTTCGACCTCGCCATGCCCATGTTCCTCAAAATCGCCGAGTACCGCGCAGGAATTGTCCCCGTCTCTTACCGCCGGGTACCATGCAGAAAGCCAGGAGGGATCAGGTTTACGATAAACGGGTTCAAGTACTTCAACTTGGTTTTAATCACCAACGTGGCGGGTGCAGGTGATATTGTGAAGGCGAGTGTAAAAGGGTCTAAGACTGGTTGGATGAGTATGAGCCGAAACTGGGGCCAAAACTGGCAGTCAAACGCCGTTTTGGTTGGTCAGTCGCTCTCTTTCAGAGTCACAGGCAGTGACCGCCGCACCTCCACTTCCTGGAACATCGTCCCTTCCAATTGGCAATTTGGTCAAACTTTTTCTGGAAAAAATTTCAGGGTCTAA 777 53.28 MATMSLLCIISLTSFLTLVNAKIQGVYSAGQWETAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCASDPKWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKPGGIRFTINGFKYFNLVLITNVAGAGDIVKASVKGSKTGWMSMSRNWGQNWQSNAVLVGQSLSFRVTGSDRRTSTSWNIVPSNWQFGQTFSGKNFRV 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8754627 8755890 - Conep11aG0117700.1 Cone11ag1137 448389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag1137 258 SUPERFAMILY PHL pollen allergen 161 252 IPR036749 -
Cone11ag1137 258 PANTHER EXPANSIN-A15 11 256 IPR002963 GO:0009664(InterPro)
Cone11ag1137 258 CDD DPBB_EXPA_N 31 159 - -
Cone11ag1137 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Cone11ag1137 258 SMART dpbb_1 67 154 IPR007112 -
Cone11ag1137 258 FunFam Expansin 21 160 - -
Cone11ag1137 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Cone11ag1137 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Cone11ag1137 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576(InterPro)
Cone11ag1137 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576(InterPro)
Cone11ag1137 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576(InterPro)
Cone11ag1137 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576(InterPro)
Cone11ag1137 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576(InterPro)
Cone11ag1137 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576(InterPro)
Cone11ag1137 258 FunFam Expansin 164 256 - -
Cone11ag1137 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664(InterPro)
Cone11ag1137 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664(InterPro)
Cone11ag1137 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664(InterPro)
Cone11ag1137 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664(InterPro)
Cone11ag1137 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664(InterPro)
Cone11ag1137 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664(InterPro)
Cone11ag1137 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664(InterPro)
Cone11ag1137 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664(InterPro)
Cone11ag1137 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664(InterPro)
Cone11ag1137 258 Gene3D - 17 160 IPR036908 -
Cone11ag1137 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Cone11ag1137 258 Gene3D - 164 256 IPR036749 -
Cone11ag1137 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1137 Cone-Chr11:8754627 Cone4ag1056 Cone-Chr4:9198068 1.93E-167 dispersed
Cone18ag1249 Cone-Chr18:8835827 Cone11ag1137 Cone-Chr11:8754627 5.87E-95 transposed
Cone1ag1273 Cone-Chr1:56207894 Cone11ag1137 Cone-Chr11:8754627 7.43E-160 wgd
Cone1ag0635 Cone-Chr1:6129085 Cone11ag1137 Cone-Chr11:8754627 4.08E-169 wgd
Cone10ag0314 Cone-Chr10:1493173 Cone11ag1137 Cone-Chr11:8754627 2.70E-160 wgd
Cone11ag1137 Cone-Chr11:8754627 Cone18ag0444 Cone-Chr18:2169890 2.73E-190 wgd
Cone11ag1137 Cone-Chr11:8754627 Cone3ag0344 Cone-Chr3:1750135 4.35E-150 wgd
Cone11ag1137 Cone-Chr11:8754627 Cone5ag0260 Cone-Chr5:1106128 5.86E-157 wgd
Cone11ag1137 Cone-Chr11:8754627 Cone5ag1140 Cone-Chr5:5119294 2.01E-169 wgd
Cone11ag1137 Cone-Chr11:8754627 Cone7ag1075 Cone-Chr7:8181630 2.00E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag1137 - - - 0.0