Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag1140 ATGAGTTTTGTTTTCCGAGGAACGAGAGCACCAGATATAGAGAGTGGTCTCTCTGGATTTATACCTGAGCGGCGTACAATGCGTGTTCATTCAGCCCGTCCAGTTAATTCTAACTCACTTGCTTTTCTTCTCACAGTTCTGTTGTTATTCATGATATTAAACTCACACCAAATGTCACCTAACTTTCTGCTCTGGCTTGTGGTTGGTGTTTTCGTGATGGCTACAACATTAAGGATGTATGCAACTTGTCAACAACTCCAGGCTCAAGCCCAAGCCCATGCAATGGCAGCCAGTGGTCTTCTGGGGCATACTGAGTTGCGGTTGCAAATGCCACCGTCCATTGCGTTCGCAACCAGAGGGCGTTTACAGGGCCTTAGACTTCAGCTTGCATTACTTGACCGGGAATTTGATGACCTAGATTATGAAACTTTGAGAGCATTGGATTCAGACAATATTCCAACAGTTCCTTCAATGAGTGAAGAAGAGATAAATGCCCTTCCTGTTCATAAGTATAAGGTCTCTGGTGCGCAAAGCGGTTCCAACCACACCCTAACGATTCAACCGGGCTCCTCTTCAACAACTACTGAGAAGAAACAAGATCCAGCCAATTCAGTTGGGAGCACAAAATCCTCAGAAGATGAACTGACTTGCAGTGTCTGCTTGGAGCAAGTTAATGTCGGAGAACTTCTACGCAGCTTGCCATGCCTACACCAGTTTCATGCAAATTGCATTGATCCATGGCTCCGGCAACAAGGAACATGTCCAGTTTGTAAGTACAGAGCACGATCCGAATTGCATGACAACGAAGAAGGTGAAACCGAAGCTTCTTACATGGTTTGA 840 45.48 MSFVFRGTRAPDIESGLSGFIPERRTMRVHSARPVNSNSLAFLLTVLLLFMILNSHQMSPNFLLWLVVGVFVMATTLRMYATCQQLQAQAQAHAMAASGLLGHTELRLQMPPSIAFATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNIPTVPSMSEEEINALPVHKYKVSGAQSGSNHTLTIQPGSSSTTTEKKQDPANSVGSTKSSEDELTCSVCLEQVNVGELLRSLPCLHQFHANCIDPWLRQQGTCPVCKYRARSELHDNEEGETEASYMV 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8790252 8793242 - Conep11aG0118100.1 Cone11ag1140 448392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag1140 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 264 IPR013083 -
Cone11ag1140 279 PANTHER TARGET OF ERK KINASE MPK-1 2 261 - GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cone11ag1140 279 SMART ring_2 217 257 IPR001841 -
Cone11ag1140 279 Pfam Ring finger domain 216 258 IPR001841 -
Cone11ag1140 279 ProSiteProfiles Zinc finger RING-type profile. 217 258 IPR001841 -
Cone11ag1140 279 SUPERFAMILY RING/U-box 211 261 - -
Cone11ag1140 279 CDD RING-H2_PA-TM-RING 216 258 - -
Cone11ag1140 279 MobiDBLite consensus disorder prediction 176 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1140 Cone-Chr11:8790252 Cone14ag0212 Cone-Chr14:989128 4.66E-16 dispersed
Cone11ag1140 Cone-Chr11:8790252 Cone18ag0440 Cone-Chr18:2144666 2.01E-179 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag1140 K16283 - csv:101216306 424.091