Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag1152 ATGGAATCGACGACGAAGATTATCAAGCTCCTCCTCCTCACATCGGTGCTGCTATCATGGGCCATGAGCACAGCCTCCGTCCAACTCTGTCCAAAGTGCGGATCAACCGCTGTTCCCTATCCTCTAAGCACCGGCACAACATGCGGCGACCAATCGTACAAAATCCGGTGCGACGCAGGCTCGCTGAAATTCGATACGCTCAACAACACCTACTCGATCACCTTCATCAACCCCTCGATCCAACGGCTCGTGATCCAGCCAGCTGGCTTCGTATCCAACACCTGCGTCACGTCCGATATTATCCACGACGGAGTACAGCTCAACAGCAGCCTTCCCTTTAACGTCACCAGCAGCAACACGATCCTGTACCTTAACTGCACGGACACGCTGTTACGGTCGCCGCTGAATTGCTCTTCAACGAGTCTGTGTCACACTTATATCAACCGTACAAGTGCCGCGTCTCCATGTATGGCTTCGCCTATATGCTGTACTTTCCGAGCGGGCGGGTCGTCGACGTCATATATGATCCGGGTTCGGGATTCGGGCTGTAGTGCTTTCACAAGCTTTGTGAACTTGGACGCGAGTTTGCCGGTGAATGACTGGGCCCAACCCGGGTTGGAGATACAGTGGGCTCAGCCGTTGGAACCGGTGTGTGGAACCCAGGCCGACTGTGATGTGAACTCTACATGTGGGGCCGATCCAGCTCAGGCGGGGGTGAGGAGGTGTTTTTGTCAATCCGGGCTCGTGTGGGACCCGGTTACAGGGGTGTGCTCGCGAAATGTGACGTGTCTAGATCCTAATGGATGTGATGGCTCAAAAGACCGAACTGCATTAATTGCAGGCTTAACTTCCGGCCTCGGAGCAGCGCTTGTGTTATTGATCATTGCCATTTTATTATACAAACGGAAAAGACAAATCAGAGAAGCTCAAGACCGACTTACAAAAGAGCGGGAAGCAATCCTAAACGCTGATGGAGGTGGGGCACGGGCTGCTAAGATCTTCTCCGGCAAACAGATTAAGAAAGCGACGCATAGCTTCTCCTCAGACCGCCTCTTAGGGGCCGGTGGTTATGGTGAAGTCTACAAAGGTATTCTTCAAGACGGAACAGTTGTAGCCGTCAAATGTGCAAAACTCGGCAACACTAAAGGAACCGATCAAGTCCTAAATGAAGTCCGAATTCTCTGCCAAGTTAATCACCGCAGCCTCGTCCGCTTGCTCGGTTGTTGTGTTGAGTTAGAGCAGCCCATTTTGGTCTATGAATACATTTCCAACGGTACTTTGCTCGAATATTTACAAGGCAAAAGAGCAGGAGGTCGTGAGGCCCTCTCGTGGATTCGTCGTCTCCGAATTGCCCATGATACTGCTGAGGGTTTAGCATACCTCCACTCCTCAGCGGTCCCACCGATTTATCACCGGGATGTCAAGTCCAGTAACATTTTGTTAGACGAGAAGTTGAATGCCAAGGTTTCGGATTTCGGTTTATCTAGATTGGCTCATACAGATTTGAGCCATATCTCAACTTGTGCCCAAGGGACTCTTGGATATCTTGATCCCGAGTATTATCGGAACTATCAGTTAACTGATAAAAGCGATGTTTATAGTTTCGGAGTGGTTCTATTGGAATTGTTGACATCTCAGAAGGCGATAGATTTCAACAGGGATTCGGATGATGTGAACTTGGCTGTTTATGTGCAGAGAATGGTTGAGGAAGAGAGATTGATGGATGTTATTGATCCAGTGGTCAAGGAAGGGGCAAGTGATTTGGAAATGGATACGATTAAGGCGCTGGGGTTTCTGGCTGTGGCGTGTCTGGAGGAACGGAGACAGAATCGTCCGTCCATGAAAGAAATTATGGAAGAGATTGATTACATTATTAGTGTTGCTACAGCTAATGTTACAAAGGAGTAG 1908 49.53 MESTTKIIKLLLLTSVLLSWAMSTASVQLCPKCGSTAVPYPLSTGTTCGDQSYKIRCDAGSLKFDTLNNTYSITFINPSIQRLVIQPAGFVSNTCVTSDIIHDGVQLNSSLPFNVTSSNTILYLNCTDTLLRSPLNCSSTSLCHTYINRTSAASPCMASPICCTFRAGGSSTSYMIRVRDSGCSAFTSFVNLDASLPVNDWAQPGLEIQWAQPLEPVCGTQADCDVNSTCGADPAQAGVRRCFCQSGLVWDPVTGVCSRNVTCLDPNGCDGSKDRTALIAGLTSGLGAALVLLIIAILLYKRKRQIREAQDRLTKEREAILNADGGGARAAKIFSGKQIKKATHSFSSDRLLGAGGYGEVYKGILQDGTVVAVKCAKLGNTKGTDQVLNEVRILCQVNHRSLVRLLGCCVELEQPILVYEYISNGTLLEYLQGKRAGGREALSWIRRLRIAHDTAEGLAYLHSSAVPPIYHRDVKSSNILLDEKLNAKVSDFGLSRLAHTDLSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSQKAIDFNRDSDDVNLAVYVQRMVEEERLMDVIDPVVKEGASDLEMDTIKALGFLAVACLEERRQNRPSMKEIMEEIDYIISVATANVTKE 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8836063 8838273 + Conep11aG0119300.1 Cone11ag1152 448404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag1152 635 SMART serkin_6 346 624 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag1152 635 FunFam Wall-associated receptor kinase-like 20 422 634 - -
Cone11ag1152 635 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 29 624 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Cone11ag1152 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone11ag1152 635 Gene3D Phosphorylase Kinase; domain 1 322 421 - -
Cone11ag1152 635 FunFam Wall-associated receptor kinase-like 20 307 421 - -
Cone11ag1152 635 Gene3D Transferase(Phosphotransferase) domain 1 422 634 - -
Cone11ag1152 635 SUPERFAMILY Protein kinase-like (PK-like) 332 620 IPR011009 -
Cone11ag1152 635 ProSiteProfiles Protein kinase domain profile. 346 624 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag1152 635 Pfam Protein tyrosine and serine/threonine kinase 349 621 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone11ag1152 635 CDD STKc_IRAK 352 622 - -
Cone11ag1152 635 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0197 Cone-Chr10:981687 Cone11ag1152 Cone-Chr11:8836063 7.94E-181 dispersed
Cone11ag1152 Cone-Chr11:8836063 Cone7ag1497 Cone-Chr7:10467632 1.97E-88 dispersed
Cone3ag0218 Cone-Chr3:1158158 Cone11ag1152 Cone-Chr11:8836063 5.58E-64 dispersed
Cone3ag0219 Cone-Chr3:1159146 Cone11ag1152 Cone-Chr11:8836063 4.19E-40 dispersed
Cone10ag0801 Cone-Chr10:4068084 Cone11ag1152 Cone-Chr11:8836063 4.61E-46 transposed
Cone11ag1152 Cone-Chr11:8836063 Cone18ag0432 Cone-Chr18:2104882 0 wgd
Cone11ag1152 Cone-Chr11:8836063 Cone3ag0366 Cone-Chr3:1855957 1.25E-236 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81908 PF05208 ALG3 3.60E-138 CL0111 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag1152 - - - 0.0