Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag1202 ATGAGGGGAGGGCACGAGCCGCGTGCAAGCTCATCTTGCGCAGCTTGCAAGCTGTTGAAGAGACGGTGCAGCCCGATGTGCATATTTGCGCCATATTTCCGGTCGGATGATGATCCAGGCAGATTCGCCAAAGTGCATAAAGTGTTTGGAGCGAGCAACGTGAGCAAGATCTTAACCGAAGTGCCGGAAGATCAGAGAGAGGATACAGCCAACTCTTTGGTGTACGAGGCCGAGGCACGGCTTAAGGACCCGGTTTATGGTTGCATTGGAGCCATAGCTTTCCTTCAAGGGAAAATGGTCGAGCTTCAGAATGATCTCAAAATCGCTCGGTCCCGCCTCGCAGTCTATGCCGCTAATTCTTCTTCCTCTTCTTCTTCTCCATATGGTGAGACGATCGTGCCTTTTTCCAATCTTCCCGGCTATACAGTAACTCATGGATTGAATGGGAATGTTGTTTGTCAGAATTCAGCGGACTAA 477 50.31 MRGGHEPRASSSCAACKLLKRRCSPMCIFAPYFRSDDDPGRFAKVHKVFGASNVSKILTEVPEDQREDTANSLVYEAEARLKDPVYGCIGAIAFLQGKMVELQNDLKIARSRLAVYAANSSSSSSSPYGETIVPFSNLPGYTVTHGLNGNVVCQNSAD 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9095715 9097502 - Conep11aG0124500.1 Cone11ag1202 448454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag1202 158 Pfam Lateral organ boundaries (LOB) domain 12 110 IPR004883 -
Cone11ag1202 158 ProSiteProfiles LOB domain profile. 11 113 IPR004883 -
Cone11ag1202 158 Coils Coil 92 119 - -
Cone11ag1202 158 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1202 Cone-Chr11:9095715 Cone6ag1377 Cone-Chr6:11057520 5.31E-40 dispersed
Cone11ag1202 Cone-Chr11:9095715 Cone18ag0386 Cone-Chr18:1870220 4.21E-97 wgd
Cone11ag1202 Cone-Chr11:9095715 Cone5ag0152 Cone-Chr5:647674 2.96E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44373 PF13041 PPR_2 1.10E-10 CL0020 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag1202 - - - 0.0