Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone11ag1236 | ATGTGTAGTGGTCCAGAGCAATCAAAATCTGCATCACATCAGACTTCACCCACCGCAGAATCTACGCCTAACCCAAAAGACATGGATTACCTAACTGTTGAAACTGATGATTCATTATACAAGTTACTCGAACTTGCTTCTGACAATGATGCTGAAGGCTTCAAACAATTAATTGATAGTGATTTGTCTTCTATTAACAAGACTGGACTCTGGTCTGTTCGCCAGATAGGCTCGAGACAGGTTGTTCGTGAGCATAGAACTCCTTTAATGGTTGCTGCCACCTATGGTAGTATTGATGTTGTTAAATTTATACTGGGTCAATCAAACATTGATGTAAATCTCTCATCTGGCCTGGATAAAAGCACTGCCCTTCATTGTGCTGCGTCGAGTGGATCTGTTAATGCAGTTGAGATTGTTAATCTCCTGCTATCAGTGGGGGCAGATGAACATTTGGTGGATGCTAATGGTAATCGCCCGGTTGATATTATTGTTGTACATCCAAAGTTGCCAAACATGAAGGTTAGACTTGAAGAACTTCTTGGCAACAATGCTTCCCCCGGATCACTTGATATGCCTAATTTACGGTTATCCATTGCTACATCCAGTTCTGAGTCAACACCGCTCTCATCATCCCCAGATAATGGGTTCCCATCTCCTTCAGACTCAATATCTTCTCCGACGGCCTTCAAATTTTCTGATGGACCTGTCGTTTCTACATTGGAGAAGAAAGAATATCCAATTGACCATTCTCTCCCTGACATTAAGAACAGTATTTATTCAACTGATGAGTTCCGCATGTTTTCATTCAAGGTCCGGCCTTGTTCACGGGCTTATTCTCATGACTGGACTGAGTGCCCTTTTGTCCACCCAGGAGAGAATGCTCGCAGAAGAGATCCAAGGAAGTTTCACTACAGCTGTGTTCCTTGCCCTGATTTCCGAAAGGGTGCTTGCAGGCGTGGGGATATGTGTGAATATGCACATGGAGTTTTTGAATGCTGGCTACATCCGGCTCAATACAGAACCCGTCTTTGCAAGGATGGCACAAGCTGTGATAGGCGGGTCTGTTTCTTTGCCCACACAACCGACGAGCTGCGGCCCTTGTATGTCTCTACTGGATCTGCTGTCCCTTCACCCAGGTCAACTGGGTCTGCCCCAAATATCATGGACATGGCTACTGCAATGAGTGTGTTACCTGGTTCCCCATCTTCAGTCTCTGCAATGTCTCCTTCTCCTTTTAGTCAGCCCATGTCTCCCTCCTCTAATAACATTCCTCACTCTCCTGTGGCCTGGCCTCTGCCAAATGTACCCACCCTTCATCTCCCTGGAAGCAATTTCCAATCCAGTCGTCTCAGGTCATCTCTTAGTGCTCGGGATATCCCTCCAGAGGATCTGAAGATGTTGCAGGATTATGATGCGCAGCAACAAATTTTAAATGACCTGACCTGTTTTTCACAGCCTCATACTAATCCCGTTTCTTTAAGCCGGTCTAGAACTCTAACTTCACCGTACCTAGACGAGCTATTTTCTGCTGAGATCTCTTCATCACCCCGTTTTGCTGACCCATCTTCTGCCTCTGTTTTCTCCCCTACCCGTAAATCTGCTGTCCTGAATCAGTTTCAACATCAGCAAAGCATGTTGTCACCCATTATTACAAACAATTTGTCCCCCAAGACTGTTGATCATCCTCTACTACAATGCCCCTTAGGAGTCTCATCTCCTGGAAGGATGTCGCCTAGAAGCATTGAGCCTATATCGCCCATGGGATCTAGGCTAGCTGCATTGGCTCAGCGCGAGAAGCATCATCATCAACAGCAATTTAGAAGCTTAAGCTCTGGGGAACTTGGATCTAACACCCCCTCTTCAATAGTTGGAACTCCAGTAAATTCTTGGTCGAAATGGGGATCCCCAAATGGAAAAGCAGATTGGTCGGTCAATGGGGATGAACTTGGTCAACTTAAGAGATCTTCATTTGAGCTTGGGAATAACGGGGAGGAGCCGGACTTGTCGTGGGTCCAATCTCTTGTCAAGGAATCTCCACCTGAGATGGTTAAAGGGAAGTTGGCAGTTCCGGTTAGAGGTACTTCCGCATCCGGTGAGGGTTTGACTACTACCAATCCCCAAGTTGAGTCTACTGATCACTCTGTTTTAGGAACTTGGCTCGAGCAGATGCAGCTTGATCAGCTTGCAGTCTAG | 2193 | 46.1 | MCSGPEQSKSASHQTSPTAESTPNPKDMDYLTVETDDSLYKLLELASDNDAEGFKQLIDSDLSSINKTGLWSVRQIGSRQVVREHRTPLMVAATYGSIDVVKFILGQSNIDVNLSSGLDKSTALHCAASSGSVNAVEIVNLLLSVGADEHLVDANGNRPVDIIVVHPKLPNMKVRLEELLGNNASPGSLDMPNLRLSIATSSSESTPLSSSPDNGFPSPSDSISSPTAFKFSDGPVVSTLEKKEYPIDHSLPDIKNSIYSTDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHTTDELRPLYVSTGSAVPSPRSTGSAPNIMDMATAMSVLPGSPSSVSAMSPSPFSQPMSPSSNNIPHSPVAWPLPNVPTLHLPGSNFQSSRLRSSLSARDIPPEDLKMLQDYDAQQQILNDLTCFSQPHTNPVSLSRSRTLTSPYLDELFSAEISSSPRFADPSSASVFSPTRKSAVLNQFQHQQSMLSPIITNNLSPKTVDHPLLQCPLGVSSPGRMSPRSIEPISPMGSRLAALAQREKHHHQQQFRSLSSGELGSNTPSSIVGTPVNSWSKWGSPNGKADWSVNGDELGQLKRSSFELGNNGEEPDLSWVQSLVKESPPEMVKGKLAVPVRGTSASGEGLTTTNPQVESTDHSVLGTWLEQMQLDQLAV | 730 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 9259938 | 9263899 | + | Conep11aG0127900.1 | Cone11ag1236 | 448488 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone11ag1236 | 730 | ProSiteProfiles | Ankyrin repeat profile. | 119 | 154 | IPR002110 | GO:0005515(InterPro) | |
| Cone11ag1236 | 730 | SMART | c3hfinal6 | 303 | 329 | IPR000571 | GO:0046872(InterPro) | |
| Cone11ag1236 | 730 | SMART | c3hfinal6 | 338 | 361 | IPR000571 | GO:0046872(InterPro) | |
| Cone11ag1236 | 730 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 307 | 328 | IPR000571 | GO:0046872(InterPro) | |
| Cone11ag1236 | 730 | Gene3D | - | 303 | 366 | - | - | |
| Cone11ag1236 | 730 | Gene3D | - | 3 | 214 | IPR036770 | - | |
| Cone11ag1236 | 730 | SMART | ANK_2a | 119 | 151 | IPR002110 | GO:0005515(InterPro) | |
| Cone11ag1236 | 730 | SMART | ANK_2a | 84 | 114 | IPR002110 | GO:0005515(InterPro) | |
| Cone11ag1236 | 730 | FunFam | Zinc finger CCCH domain-containing protein 66 | 261 | 329 | - | - | |
| Cone11ag1236 | 730 | PANTHER | UNKEMPT FAMILY MEMBER | 74 | 679 | IPR045234 | - | |
| Cone11ag1236 | 730 | ProSiteProfiles | Zinc finger C3H1-type profile. | 308 | 330 | IPR000571 | GO:0046872(InterPro) | |
| Cone11ag1236 | 730 | MobiDBLite | consensus disorder prediction | 594 | 619 | - | - | |
| Cone11ag1236 | 730 | ProSiteProfiles | Ankyrin repeat region circular profile. | 119 | 153 | - | - | |
| Cone11ag1236 | 730 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Cone11ag1236 | 730 | MobiDBLite | consensus disorder prediction | 200 | 227 | - | - | |
| Cone11ag1236 | 730 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
| Cone11ag1236 | 730 | SUPERFAMILY | Ankyrin repeat | 46 | 190 | IPR036770 | - | |
| Cone11ag1236 | 730 | Pfam | Ankyrin repeats (3 copies) | 46 | 149 | IPR002110 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone11ag1236 | Cone-Chr11:9259938 | Cone13ag0563 | Cone-Chr13:5816285 | 5.98e-311 | dispersed | |
| Cone1ag1210 | Cone-Chr1:55944624 | Cone11ag1236 | Cone-Chr11:9259938 | 2.94E-122 | wgd | |
| Cone11ag1236 | Cone-Chr11:9259938 | Cone18ag0358 | Cone-Chr18:1739191 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 44374 | PF13041 | PPR_2 | 1.30E-10 | CL0020 | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone11ag1236 | - | - | - | 0.0 |