Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag1246 ATGGAGGAAGAGAAAGGTGTTCTCGCCCAGAAACTGGTCGACGTTGTGAACGAGATAGCTTCGATCTCGGATTACAGGTGTACGGTCAAGAAGCAGTATTGTAATCTGGTTAGGAGATTGAAGCTCTTAATTCCGATGTTCGAGGAGATTAGGGATTGCAAAGAGATTGTACCTGAGGAGACGGTGCATGCTCTGATCTCGTTGAAGAATACTCTAGAGTCAGCTAAGGAGTCGCTTAGATTTGGGAGCGAGGGGAGCAAGATATACTTGGTCCTAGAGAGGGAAAACATAATGAAAAAATTCCAAGAAGTAACAGCACAATTAGAACAAGCTTTGAGTGGGATTTCATATGACAAACTTGACATATCTGATGAAGTTAAGGAACAGGTCGAGCTTGTTCTTGCCCAGTTCAGACGAGCCAAAGGCAGGGCTGATGTGCCTGATGTTGAGCTATATGAAGATCTCTTGTCCCTTTACAATAGGAGCAATGATTCTTCTACAGATCCAGATGTCCTAAGGAGACTGGCTGGGAAGTTACAATTAGTGGGAATATCTGACCTCACCCAAGAGTCAATAGCTTTGCATGAGATGGTTGCTGCGAGTGGTGGTGATCCAGGAGAGAGCATTGAGAAGATGTCAATGCTACTAAAGCAAATTAAGGATTTTGTTCAAACAGAAAACCCTGAAATGGATACTCCTGAAAGATCAACGAGTCTTCCTTCGGGTTTCTCTGGTCAAATATACACCGACATGACTCAAAAGGCCACAGTCATACCAGATGATTTTCGCTGTCCTATATCCTTAGAGTTGATGAAGGATCCTGTAATAGTTTCAACTGGGCAGACCTATGAACGTTCCTGCATTGAAAAGTGGCTTGAGGCAGGGCATGGGACATGTCCTAAGACCCAGCAAACCCTCTCTAGCACCACTCTTACACCAAATTACGTCTTGCGTAGTCTCATAGCCCAATGGTGCGAGGCTAACGGCATCGAACCTCCAAAACGACCCAGCAGTTCTCGACCCACTAAAACCTTATCTTCATGCTCGCCTGCCGAACGAACAAAGATCGAAATTCTCCTCCGCAAGCTAAGCTCATCCAATCAAGAAGACCATCGTTCTGCTGCCTGTGAAATTCGCCTTCTTGCCAAACGCAATGCAGACAACAGGGTTGCCATAGCTGAGGCCGGAGCAATCCCTCTTCTTATAGGCCTCCTTTCAACCCCAGATTCCCGTACTCAAGAGCATGCAGTGACAGCACTTCTTAACCTTTCCATATGCGAGGATAACAAGGGAAGCATCATTTCCTCCGGGGCCGTTCCGGGTATAGTAAATGTGCTTAAAAAGGGAAGCATGGAAGCTCGGGAAAATGCTGCTGCTACCCTTTTTAGCCTCTCAGTTATAGATGAAAATAAAGTTACTATTGGTGCGTCAGGTGCCATCCCTCCACTTGTAACGCTTTTGAGTGAAGGTACTCAAAGGGGAAAGAAAGATGCAGCTACGGCTCTTTTCAATTTGTGCATTTACCAAGGGAATAAGGGAAAGGCCGTGAGGTCTGGTGTTGTTCCCACACTAATGCAGCTCTTGACTGAGCCGGGTGGAGGGATGGTTGATGAGGCCCTAGCCATCTTAGCCATATTGTCTAGCCATCCGGAAGGGAAGGCTGCCATTGGAGCTGCTGAAGCAGTGCCTGTCTTGGTTGAGGTGATTGGGATTGGATCCCCAAGGAATAGAGAGAATGCAGCTGCTGTTATGGTGCACCTTTGTGCGGGGGATCAACAACATTTAGTGGAGGCCCAGGAGTTGGGAGTGGTGGGTCCGTTAATAGATTTGGCACAGAATGGCACGGATAGAGGGAAGAGAAAGGCTGCACAATTGCTGGAGCGTTTGAACAGGTTTCTTGAGCAGCAAAAACAGGCTCAGGCTCAGGTAGAAGCGGAGGCTCAATCTCAAACCCAGATACCACCCTCCTCAACAGATGCTGCTGAAAGCTGA 1992 47.19 MEEEKGVLAQKLVDVVNEIASISDYRCTVKKQYCNLVRRLKLLIPMFEEIRDCKEIVPEETVHALISLKNTLESAKESLRFGSEGSKIYLVLERENIMKKFQEVTAQLEQALSGISYDKLDISDEVKEQVELVLAQFRRAKGRADVPDVELYEDLLSLYNRSNDSSTDPDVLRRLAGKLQLVGISDLTQESIALHEMVAASGGDPGESIEKMSMLLKQIKDFVQTENPEMDTPERSTSLPSGFSGQIYTDMTQKATVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQTLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPSSSRPTKTLSSCSPAERTKIEILLRKLSSSNQEDHRSAACEIRLLAKRNADNRVAIAEAGAIPLLIGLLSTPDSRTQEHAVTALLNLSICEDNKGSIISSGAVPGIVNVLKKGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRSGVVPTLMQLLTEPGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGIGSPRNRENAAAVMVHLCAGDQQHLVEAQELGVVGPLIDLAQNGTDRGKRKAAQLLERLNRFLEQQKQAQAQVEAEAQSQTQIPPSSTDAAES 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9316383 9320129 + Conep11aG0129000.1 Cone11ag1246 448498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag1246 663 Gene3D - 8 118 IPR036537 GO:0007166(InterPro)
Cone11ag1246 663 PANTHER U BOX DOMAIN-CONTAINING 28 631 - -
Cone11ag1246 663 Gene3D - 342 492 IPR011989 -
Cone11ag1246 663 FunFam RING-type E3 ubiquitin transferase 5 118 - -
Cone11ag1246 663 SUPERFAMILY ARM repeat 356 632 IPR016024 -
Cone11ag1246 663 Pfam Mixed lineage kinase domain-like N-terminal domain 28 116 IPR054000 -
Cone11ag1246 663 SUPERFAMILY RING/U-box 248 334 - -
Cone11ag1246 663 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone11ag1246 663 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515(InterPro)
Cone11ag1246 663 Coils Coil 619 646 - -
Cone11ag1246 663 Pfam U-box domain 258 328 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone11ag1246 663 FunFam RING-type E3 ubiquitin transferase 341 492 - -
Cone11ag1246 663 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515(InterPro)
Cone11ag1246 663 Pfam Armadillo/beta-catenin-like repeat 468 506 IPR000225 GO:0005515(InterPro)
Cone11ag1246 663 SMART arm_5 508 548 IPR000225 GO:0005515(InterPro)
Cone11ag1246 663 SMART arm_5 549 589 IPR000225 GO:0005515(InterPro)
Cone11ag1246 663 SMART arm_5 385 425 IPR000225 GO:0005515(InterPro)
Cone11ag1246 663 SMART arm_5 591 631 IPR000225 GO:0005515(InterPro)
Cone11ag1246 663 SMART arm_5 467 507 IPR000225 GO:0005515(InterPro)
Cone11ag1246 663 SMART arm_5 426 466 IPR000225 GO:0005515(InterPro)
Cone11ag1246 663 Gene3D - 496 649 IPR011989 -
Cone11ag1246 663 CDD MLKL_NTD 10 138 - -
Cone11ag1246 663 SMART Ubox_2 261 324 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone11ag1246 663 FunFam RING-type E3 ubiquitin transferase 532 650 - -
Cone11ag1246 663 CDD RING-Ubox_PUB 259 311 IPR045210 -
Cone11ag1246 663 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 331 IPR013083 -
Cone11ag1246 663 MobiDBLite consensus disorder prediction 637 663 - -
Cone11ag1246 663 FunFam RING-type E3 ubiquitin transferase 258 331 - -
Cone11ag1246 663 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1246 Cone-Chr11:9316383 Cone5ag0357 Cone-Chr5:1515471 1.48E-155 dispersed
Cone1ag1368 Cone-Chr1:56616173 Cone11ag1246 Cone-Chr11:9316383 1.12E-15 dispersed
Cone2ag0881 Cone-Chr2:34729517 Cone11ag1246 Cone-Chr11:9316383 1.53E-09 dispersed
Cone8ag1322 Cone-Chr8:10723664 Cone11ag1246 Cone-Chr11:9316383 2.59E-14 dispersed
Cone9ag1248 Cone-Chr9:9156608 Cone11ag1246 Cone-Chr11:9316383 1.16E-15 dispersed
Cone11ag1246 Cone-Chr11:9316383 Cone18ag0344 Cone-Chr18:1688095 2.07E-307 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag1246 K27628 - cit:102612007 1028.85