Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag1283 ATGGAGAGCAGTGACACAAATACAAACACAACTAATTCATCATCAAGCCCTCCTCTCATAACAACTACTCATCACTCACCTTCTTCGATATCATCTGGACTAAAAAACATCACTCAATTCCCACCACCTATAATTCTAAGTCCTTGCGCCGCCTGCAAGATTTTGCGGCGGCGGTGTGCCGAGAATTGTGTCTTGGCTCCATACTTTCCTCCCACCGAGCCCACCAAATTCACCATCGCCCACCGTGTCTTCGGTGCTAGCAACATCATCAAGTTCTTGCAGGAACTGCCTGAATATCAAAGAGCGGATGCGGTGAGCAGCATGGTGTATGAAGCAAGTGCAAGGATAAGAGATCCGGTGTATGGATGTGCCGGGGCAATATGTCAACTCCAGAAGCAAGTGAATGAGCTCCAAGAACAGTTAGCCAAATCGCAAGCCGAGCTCGTCAACATGCAACTGCAACAAGCGAACCTCGTTGCCCTAATTTGTAGGGAATTCTCAGTCTCTCCACAAGCATCTCCTTATAGTGATCATCATCAATGTGATCTAGACAGTTTCATCAACTCTAGTCCAAATAACTATCAAACTAATCCAAGTTTCATGGAGGACAACAGTTTGGGTTCCCTGTGGGAGCCACTTTGGACATGA 648 46.6 MESSDTNTNTTNSSSSPPLITTTHHSPSSISSGLKNITQFPPPIILSPCAACKILRRRCAENCVLAPYFPPTEPTKFTIAHRVFGASNIIKFLQELPEYQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVNELQEQLAKSQAELVNMQLQQANLVALICREFSVSPQASPYSDHHQCDLDSFINSSPNNYQTNPSFMEDNSLGSLWEPLWT 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9521027 9522365 + Conep11aG0132700.1 Cone11ag1283 448535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag1283 215 MobiDBLite consensus disorder prediction 1 31 - -
Cone11ag1283 215 Coils Coil 127 154 - -
Cone11ag1283 215 Pfam Lateral organ boundaries (LOB) domain 48 145 IPR004883 -
Cone11ag1283 215 ProSiteProfiles LOB domain profile. 47 148 IPR004883 -
Cone11ag1283 215 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 47 179 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1283 Cone-Chr11:9521027 Cone8ag1587 Cone-Chr8:11808670 3.03E-52 dispersed
Cone1ag1339 Cone-Chr1:56487374 Cone11ag1283 Cone-Chr11:9521027 1.68E-64 wgd
Cone11ag1078 Cone-Chr11:8438866 Cone11ag1283 Cone-Chr11:9521027 5.30E-63 wgd
Cone11ag1283 Cone-Chr11:9521027 Cone18ag0498 Cone-Chr18:2433576 1.63E-64 wgd
Cone11ag1283 Cone-Chr11:9521027 Cone18ag0297 Cone-Chr18:1448190 3.60E-130 wgd
Cone11ag1283 Cone-Chr11:9521027 Cone5ag0326 Cone-Chr5:1378722 1.86E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44378 PF00687 Ribosomal_L1 3.00E-36 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag1283 - - - 0.0