Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag1288 ATGGCTACAAACCGATTCATTTGCGAAATTTGCAACAAGGGTTTTCAAAGGGACCAGAACTTACAACTACACCGAAGAGGTCACAACTTGCCGTGGAAGCTCCGGCAAAGATCAAACAAAGAAGTGGTTCGGAAAAAGGTCTATGTATGCCCGGAAAAGAGTTGCGTTCATAACGATCCGTCCCGAGCCCTAGGCGACCTCACCGGAGTAAAGAAGCATTATAGTAGAAAACATGGTGAGAAAAAGTGGAAGTGTGAGAAATGTTCGAAGAAATATGCTGTTCAGTCGGACTGGAAGGCTCATAGTAAGATTTGTGGGACTAGAGAGTATAAATGTGACTGTGGAACTATCTTTTCCAGGAAGGATAGCTATATCACCCACAGGGCATTTTGTGATGCATTGGCCGAAGAAAGTGGTAGGTTCAATCCAATTATGTCATCATCTATCGATCAGACCAGCTTGATGAGAAACAACTTTATAAATGGGACAGCTGCTGCACTTTCAAATCCTCAAGGAACCATGATTAATGTTCCTCATCGATTCAATCCTCAAGTACTTTTTCAACCCACAGATCATCATTTCATTGCAAGCTCAGATTCTCCATCAATGGCTGCCAACTTCAATATGAGCTCTACCACTACTGCTACTAATTCAGATATTGGTCAAAAGCCATCAGTTAATAGGTTTCCCCTCTGGACTGACCCACCGAATTCTACCCCCTTAAATTTCCCTCATCATCAGGTAATGCAGTCATCATCATTGAATGTTACTCCTATGAGTAACAATATGTTTGGATCATCTTCTCCAAGTGCTACACAATGGCTTAGCAATCTCTCTATGCCGCCGTTAGTGCGTCGAGGTGGAGGAGTACTAAAAGAGGAAGAAGTAGAAGAAGATCAAGACGGAATGAATAATGATTCCTTGTATTCTAGTACTACTAATCAGATGTCGGCCAGCACGCTTTTGCAGAAAGCTGCTCAGATGGGTCCGACACAGTCGTCCACTGCCGAATTACCGGCTTTCAATGGAATTAGGGCTTTCTCCGATTTTCCAAAACCTAATATGAATACGGGCTATAATCAAATGATTGGAGATCACGTTAATGGGTCGTCGTTATTGTTACAAGGTGATGTCCATTTAAGCTCAAGCTCGATGTTTAATATGGGCTGTAACGTTAAGAATTTTGACCAATTGATGATGATGAGTAGCACTAGTAAGTTGAGACCAGATGGAGATCTTCATCATGAGAATGAGACTAGAGATTTTCTTGGAGTAGGAAGGGATCATGATCATGATCATATAAATCATGTAGGTGGGACAGCTTTTTTCCAAAATGAGCTTGCTAGGTTTGCTACGATGGGTTCTAATTCTATGGATTTGAGCCATTACTATGGTGCTGCTGCTACTCCTGCACAACATAATCACTACGGTACATAA 1437 41.89 MATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVVRKKVYVCPEKSCVHNDPSRALGDLTGVKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRKDSYITHRAFCDALAEESGRFNPIMSSSIDQTSLMRNNFINGTAAALSNPQGTMINVPHRFNPQVLFQPTDHHFIASSDSPSMAANFNMSSTTTATNSDIGQKPSVNRFPLWTDPPNSTPLNFPHHQVMQSSSLNVTPMSNNMFGSSSPSATQWLSNLSMPPLVRRGGGVLKEEEVEEDQDGMNNDSLYSSTTNQMSASTLLQKAAQMGPTQSSTAELPAFNGIRAFSDFPKPNMNTGYNQMIGDHVNGSSLLLQGDVHLSSSSMFNMGCNVKNFDQLMMMSSTSKLRPDGDLHHENETRDFLGVGRDHDHDHINHVGGTAFFQNELARFATMGSNSMDLSHYYGAAATPAQHNHYGT 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9550552 9553560 + Conep11aG0133200.1 Cone11ag1288 448540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag1288 478 Gene3D Classic Zinc Finger 41 131 - -
Cone11ag1288 478 FunFam Zinc finger protein MAGPIE 2 29 - -
Cone11ag1288 478 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 109 146 - -
Cone11ag1288 478 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 44 78 - -
Cone11ag1288 478 SUPERFAMILY beta-beta-alpha zinc fingers 5 103 IPR036236 -
Cone11ag1288 478 Pfam Zinc finger, C2H2 type 6 28 IPR013087 -
Cone11ag1288 478 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 82 106 - -
Cone11ag1288 478 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Cone11ag1288 478 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Cone11ag1288 478 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 432 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone11ag1288 478 MobiDBLite consensus disorder prediction 294 315 - -
Cone11ag1288 478 SMART c2h2final6 48 78 IPR013087 -
Cone11ag1288 478 SMART c2h2final6 83 103 IPR013087 -
Cone11ag1288 478 SMART c2h2final6 6 28 IPR013087 -
Cone11ag1288 478 FunFam protein indeterminate-domain 5, chloroplastic-like 61 140 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1288 Cone-Chr11:9550552 Cone4ag0926 Cone-Chr4:7625461 1.04E-86 dispersed
Cone10ag0256 Cone-Chr10:1223433 Cone11ag1288 Cone-Chr11:9550552 9.01E-91 wgd
Cone11ag1288 Cone-Chr11:9550552 Cone13ag1273 Cone-Chr13:9597910 5.71E-87 wgd
Cone11ag1288 Cone-Chr11:9550552 Cone18ag0291 Cone-Chr18:1420318 7.01E-185 wgd
Cone11ag1288 Cone-Chr11:9550552 Cone19ag1261 Cone-Chr19:8626165 7.28E-87 wgd
Cone11ag1288 Cone-Chr11:9550552 Cone3ag0282 Cone-Chr3:1468105 1.19E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44379 PF01871 AMMECR1 2.60E-35 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag1288 K25870 - vvi:100248459 365.925