Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag1308 ATGGTCAAGGATTATAGGAAGAAAGTAGTGAAGCTTGCGGGAAAAAGTTTGACCATTGGTCAAGTCGCGGCCGTGGCGGCAGCAGAGGCGGTGGTGGTGGAGCTGGAGGATTCGGCAAGGGTGGCCGTGGAGGAGAGTAGTATATGGGTGGCGGAGAGTGTGGAGAGAGGGACGGATAGTTATGGGGTCCCTACTGGATTTGGTGCAACTTCTCACAGGAGGACTAAGCAAGGGGGCGCTTTACAGAATGAGCTGATTAGATTCTTGAATGCTGGAATCTTTGGAGATGGAAAAGAAGCGGCTACTCACACAATGCCAAAGACAACTACAAGAGCTGCAATGCTAGTCAGAATCAACACTCTTCTCCAGGGCTACTCAGGCATCAAATTTGAGATCCTTGAAGCCATAGCAAAGCTTCTTAACCACAACATAACACCATGTTGTTCGGTCCCTTTTGCTTACATTGCTGGCCTCTTAACCTGCAGGCCCAATTCCAAAACTGCAGCTATAATGGAATACATATTGGATGGGAGCCCTTATGTTAAAGAAGCAAAAAAGTTGCATGAGATTGATCCTCTCCAAAAGCCGAAACAAGACCGATATGCTTTCCGGACTTCCCCACAAGGGTTAGGTCCTCAGATCGAAGTTATCCGAAAGTCGACTAAGTCCATTGAGAGTGAGATTAACTCAGTGAATGATAATCCATTGACTGATGTCTCTATGAACAAGGCAATTCATGGTGAGAATTTTCAAGGATTCACAGTTGGGGTTTCAATGGATAACACAAGATTAGCTATAGCTTCGGTTGGAAAACTCGTGTTTGCTCAATTCCCCGAGCTTGTTAATGAATTTTACAATAATGGGTTGCCATAA 873 45.48 MVKDYRKKVVKLAGKSLTIGQVAAVAAAEAVVVELEDSARVAVEESSIWVAESVERGTDSYGVPTGFGATSHRRTKQGGALQNELIRFLNAGIFGDGKEAATHTMPKTTTRAAMLVRINTLLQGYSGIKFEILEAIAKLLNHNITPCCSVPFAYIAGLLTCRPNSKTAAIMEYILDGSPYVKEAKKLHEIDPLQKPKQDRYAFRTSPQGLGPQIEVIRKSTKSIESEINSVNDNPLTDVSMNKAIHGENFQGFTVGVSMDNTRLAIASVGKLVFAQFPELVNEFYNNGLP 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9664209 9665759 + Conep11aG0135200.1 Cone11ag1308 448560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag1308 290 SUPERFAMILY L-aspartase-like 3 290 IPR008948 GO:0003824(InterPro)
Cone11ag1308 290 Gene3D Fumarase/aspartase (Central domain) 166 290 - -
Cone11ag1308 290 PANTHER HISTIDINE AMMONIA-LYASE 1 166 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cone11ag1308 290 Pfam Aromatic amino acid lyase 165 290 IPR001106 -
Cone11ag1308 290 Pfam Aromatic amino acid lyase 17 147 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1308 Cone-Chr11:9664209 Cone7ag0757 Cone-Chr7:4676806 9.40E-88 dispersed
Cone1ag1357 Cone-Chr1:56574402 Cone11ag1308 Cone-Chr11:9664209 6.53E-123 wgd
Cone11ag1308 Cone-Chr11:9664209 Cone13ag1260 Cone-Chr13:9546345 2.21E-127 wgd
Cone11ag1308 Cone-Chr11:9664209 Cone18ag0271 Cone-Chr18:1311305 2.11E-152 wgd
Cone11ag1308 Cone-Chr11:9664209 Cone19ag1247 Cone-Chr19:8569861 2.72E-128 wgd
Cone11ag1308 Cone-Chr11:9664209 Cone5ag0346 Cone-Chr5:1476230 7.67E-123 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag1308 K10775 - ath:AT3G10340 224.557