Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag1311 ATGGATATAAGTGGATTTGGTTCTGAATCACATGTTGCACAACGAAGCAGGCGTGATAAGTTGAGAGTTCAGCTAACTAGTTCAACATCAGCAAAACATTTGCCAGTATTCCCCGGTTCGAGTTTTCTTCATAATCACCAATCTTTGCTTCCCTCGGAATTTATCAATTTTTCGACGGATGACATGATGGAAAGGCAAGGTTTAGGTACTGCAACATATCAATCCGGTGCTAGGCCGATTGTGGGGCCCGCCTCCGAGGATGCCAGCTCCTTCATTGCCGCCTCCTCTACTCTCCCTTTGTCTTCTCCACATTTCAACTCTTTACCCAAAGTTCCTCAACATCATGATCAACTTCAAAATGACTCTACTTGGAAAAGCTTTTGCTCTCATCAAAGTTGTGATAATTCGATGGTGACCTCTGAAGGTGATCAAATAAATCCGAACCGGATGTTAGTAAAGCATAGCCATCAGAATTTTGGAGATGTTCACTTTGGTAGTACTCCAATTTACCGAAATATCAATGACATCTCCGTCTCGATGGAAACCCAAGGTTTAGAGCAAATGGTCCCACTTGTTCATCACAACATGGGAGAAATCCGCGACCAAGGTGATCATGATGATGATCAATGGGATGCAAATGGCAGTGAACTTGCCCTTCTTCCTGCTTTTAGCAATCAAGCAAACGTGCTACGTAATTTTGATAATACCGGTTCAAATTGGACGGATCGTAGATCGATTGAAAGTGGTGGTGATCACTTGGGTTCTTGGTCAAGGAAAAATGATGAAGAATTGAGGACTCTATTGACTGATTCCAATCCACAAGGCTTATCTCTATCCCTCTCCTCAAATCCACATTCGAAATTTCCCATTGCTCATTTTGAAGATCAAGGATGTGGACCGAAAGATGAAAACCAAAGAAGCGGATTTTTCCGGAACGTTCGTCAAGAATCTCAAACAGCCAAGTCCATTTATAGCAATATATGTCCTATACCAAAGCCATCGATTATTAGTAAAAGTAGTGGCAGATCTCTTCAAGACATAGTAGGAGTTTCTACAAACAGTACTACTTATCGAAATACGGGCCCGCTTGGCCCTTTTACGGGGTATGCAACCATTTTAAAAAGCTCGAAATTCTTGAAGCCGGCTCAACAACTATTGGATGAACTTTGCGGCTTAACCAGTTCGAAATTTGGCAAAGCAAGTTCATTGTCTGAGAGGATATCTAGTGGAGAAGTCAGCAATTCTTCTTTGGCTGATCATGATCGTCATATGTATGCTGCTAATGCAAATATCGAAACTGAGGTTAATGTAAGTAAGGGAAATAATAATAACTCGTCTGCTTCATCTTCAACTTTTCACAGCTCGAGTGAAGTGTATGGTGATGGATGTGGAACAAGGAGCAGTGTTTCTTCGGAGGCTTTGCAGCCTGAGTTCCAGCAAAAGAAGGCGAAACTTCTATATATGCAGGAGGAGATTTGCAGAAGGTACAAGCAATATCAGCAGCAAATGCAAATGGTTGTTTCCTCATTCGAATCTGTAGCAGGGCTTAGTTCTGTCGCTCCATATATTTCATTGGCTCTCGGGACAATTTCGAAGCACTTTTGCTGTCTGAAAAATGCGATTTCGGAACAGCTAAGACATGCTAAGAAAGCATTAGGGGAGGATCGTGTTATTATTTCATCCCCCACCACCAAAACAAGCGGCAGCAATATTGGTGATACTAATCCGGCCCGAGTAAAATACATGGATCTTACAAAGCACAACAAATCTAGTGGGGTTAACAACATTGGGTATCTTGAAACACAACCGGTTCGAAGACCTCAACGAGGCCTACCGGAACGTTCCGTGGCTATTCTTCGGGCTTGGCTATTTGAGCATTTTCTCCACCCGTACCCGACTGATACGGATAAGCATATGTTAGCTAATCAAACAGGCCTAACACGTAACCAGGTATCAAATTGGTTCATCAATGCTCGGGTGCGCGTTTGGAAAACGATGGTTGAAGAAATACATGCACTGGAAACCAAAGGAGGCCTTGCTGAATCAAATCAACATCACTCGGACAAGAATGAAGTTGTTTCCGGAGTAGAAGGTACTACTAGCTGGCGTCTACCTGGTGACCCTAGAGGATCAAAAAACCCGAGTGTGAATGTCCTTCATGTGGATCAGTCATTGGGTCCTAGAGAGGCAATTTATGATCGCCCGTGGACCCAGGAAAAGCGATCGAGATTAGATGGTCATGGGGTCCATTTGAATATGATGGACGGGGCATTGACGAGTTTCATGCCTTATCAGAAAACCGGCGAGTTAGGGGGTCTCGGAGCCGTGTCTCTAACATTGGGTCTCAGGCATCGAGTCGAGGGTGCCTCTCCTCCTCAGCAGTTCCAACAACAAGACGGTCATATTTTACGACAGTATGGATCGAGTCAAATGATTCATGATTATGGGGGGTAA 2454 43.68 MDISGFGSESHVAQRSRRDKLRVQLTSSTSAKHLPVFPGSSFLHNHQSLLPSEFINFSTDDMMERQGLGTATYQSGARPIVGPASEDASSFIAASSTLPLSSPHFNSLPKVPQHHDQLQNDSTWKSFCSHQSCDNSMVTSEGDQINPNRMLVKHSHQNFGDVHFGSTPIYRNINDISVSMETQGLEQMVPLVHHNMGEIRDQGDHDDDQWDANGSELALLPAFSNQANVLRNFDNTGSNWTDRRSIESGGDHLGSWSRKNDEELRTLLTDSNPQGLSLSLSSNPHSKFPIAHFEDQGCGPKDENQRSGFFRNVRQESQTAKSIYSNICPIPKPSIISKSSGRSLQDIVGVSTNSTTYRNTGPLGPFTGYATILKSSKFLKPAQQLLDELCGLTSSKFGKASSLSERISSGEVSNSSLADHDRHMYAANANIETEVNVSKGNNNNSSASSSTFHSSSEVYGDGCGTRSSVSSEALQPEFQQKKAKLLYMQEEICRRYKQYQQQMQMVVSSFESVAGLSSVAPYISLALGTISKHFCCLKNAISEQLRHAKKALGEDRVIISSPTTKTSGSNIGDTNPARVKYMDLTKHNKSSGVNNIGYLETQPVRRPQRGLPERSVAILRAWLFEHFLHPYPTDTDKHMLANQTGLTRNQVSNWFINARVRVWKTMVEEIHALETKGGLAESNQHHSDKNEVVSGVEGTTSWRLPGDPRGSKNPSVNVLHVDQSLGPREAIYDRPWTQEKRSRLDGHGVHLNMMDGALTSFMPYQKTGELGGLGAVSLTLGLRHRVEGASPPQQFQQQDGHILRQYGSSQMIHDYGG 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9683624 9686949 - Conep11aG0135500.1 Cone11ag1311 448563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag1311 817 SMART prehox3 367 543 IPR006563 -
Cone11ag1311 817 MobiDBLite consensus disorder prediction 678 692 - -
Cone11ag1311 817 Pfam Associated with HOX 372 542 IPR006563 -
Cone11ag1311 817 MobiDBLite consensus disorder prediction 1 24 - -
Cone11ag1311 817 Gene3D - 608 670 - -
Cone11ag1311 817 SUPERFAMILY Homeodomain-like 605 670 IPR009057 -
Cone11ag1311 817 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 287 688 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone11ag1311 817 CDD homeodomain 605 666 IPR001356 GO:0003677(InterPro)
Cone11ag1311 817 MobiDBLite consensus disorder prediction 678 717 - -
Cone11ag1311 817 Pfam Homeobox KN domain 622 661 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone11ag1311 817 ProSiteProfiles 'Homeobox' domain profile. 602 665 IPR001356 GO:0003677(InterPro)
Cone11ag1311 817 FunFam BEL1-like homeodomain protein 9 608 670 - -
Cone11ag1311 817 SMART HOX_1 605 669 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0342 Cone-Chr10:1625091 Cone11ag1311 Cone-Chr11:9683624 1.32E-67 dispersed
Cone11ag1311 Cone-Chr11:9683624 Cone3ag0372 Cone-Chr3:1878156 2.99E-66 dispersed
Cone18ag0268 Cone-Chr18:1291051 Cone11ag1311 Cone-Chr11:9683624 4.71E-180 transposed
Cone11ag1311 Cone-Chr11:9683624 Cone18ag0267 Cone-Chr18:1289312 1.86E-227 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44383 PF13639 zf-RING_2 9.20E-15 CL0229 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag1311 - - - 0.0