Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag1329 ATGATTTCTGGGGCGGCGACCACTTCCCAATTAGCAATTCTTCAAGTGTATCCTGCCCCAGATCAAGATCATGATCACAACTCTACTCCTACTACTACTCATGCTGATCACCAGTCAACCACCTTCCTTTACAGCCTTTCGATCCTCAAAGAGAAGGTTCATCTGGTTCAATCAACGGCCGATATAGTTTTCAATCCTCCTCCTCCTCATCAACATCAGACTCAATCATCTGTAGCATTTGCCACTATGAATTCACTGCTCCAAGAAATCATTATGCTTTCTTCTTCTATGATGTTCACATGCCAAGAAATGACTTCTCTTGGTCCCACCCCAGGTAATAACATCAACCCCACAACTACTACTAATAACACTACTACTGATCACCATCATGGAGGTCGTGATCAGTTCATGCACCATCAAGTTTCAAAGCTTCCCGCAGAGGATCATGGCCAAGAAAGCGTGCAACCTTTCTATTCTAGTAATCAACTTGATAATTGGTATGGCATCGAAAACTATAACACTAATGGCAAAGTGGGGATAAGTAGTATTGAAATTAATCATGAATTAGGTTCACAAAGTCAACATAATAACAACAATATTAACAACAACATGGGTAATAATAATTTCGATATTATCGAATTAAACGCAGCCGATTTATTAGCAAAGTACACACATTATTGTCAAATTTGTGGTAAAGGGTTTAAGCGAGATGCGAATTTGAGAATGCATATGAGAGCACATGGAGATGAGTACAAGACAAGTGCCGCCCTAATCAACCCCATGAAGAGCAAAGGGATTAGTACTAGTAACTATAGTACAAGTACCAACCAAAATAATAATAATAATGTGATGCCCGGGCAAAATGAGGAGTGTTCGGCTAACTTTCCGAGGAAATATTCGTGCCCGCAGGAAGGGTGCCGGTGGAATCAAAAGCACGCGAAATTCCAACCGCTGAAGTCAATGATTTGCGTGAAGAATCATTACAAGAGGAGTCATTGTCCGAAGATGTATATCTGCAAGAGATGTAACAGCAAACAGTTTTCTGTTCTCTCTGACCTGAGGACCCATGAAAAACATTGTGGGGATTTGAAATGGTTGTGTTCTTGTGGGACTACGTTTTCCAGAAAGGATAAACTTATGGGTCATGTTGCTTTGTTTGTGGGGCATTCACCTGTTGTCAATTCCATGGTAAAGCCTGAGCATCAAGATCATCATTAG 1218 40.8 MISGAATTSQLAILQVYPAPDQDHDHNSTPTTTHADHQSTTFLYSLSILKEKVHLVQSTADIVFNPPPPHQHQTQSSVAFATMNSLLQEIIMLSSSMMFTCQEMTSLGPTPGNNINPTTTTNNTTTDHHHGGRDQFMHHQVSKLPAEDHGQESVQPFYSSNQLDNWYGIENYNTNGKVGISSIEINHELGSQSQHNNNNINNNMGNNNFDIIELNAADLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKTSAALINPMKSKGISTSNYSTSTNQNNNNNVMPGQNEECSANFPRKYSCPQEGCRWNQKHAKFQPLKSMICVKNHYKRSHCPKMYICKRCNSKQFSVLSDLRTHEKHCGDLKWLCSCGTTFSRKDKLMGHVALFVGHSPVVNSMVKPEHQDHH 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9776655 9777872 + Conep11aG0137500.1 Cone11ag1329 448581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag1329 405 ProSiteProfiles Zinc finger C2H2 type domain profile. 225 252 IPR013087 -
Cone11ag1329 405 FunFam Zinc finger protein 574 224 249 - -
Cone11ag1329 405 SUPERFAMILY beta-beta-alpha zinc fingers 223 250 IPR036236 -
Cone11ag1329 405 ProSitePatterns Zinc finger C2H2 type domain signature. 227 247 IPR013087 -
Cone11ag1329 405 SMART c2h2final6 225 247 IPR013087 -
Cone11ag1329 405 SMART c2h2final6 337 359 IPR013087 -
Cone11ag1329 405 SMART c2h2final6 299 332 IPR013087 -
Cone11ag1329 405 MobiDBLite consensus disorder prediction 107 126 - -
Cone11ag1329 405 Gene3D Classic Zinc Finger 206 285 - -
Cone11ag1329 405 MobiDBLite consensus disorder prediction 107 133 - -
Cone11ag1329 405 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 25 400 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1329 Cone-Chr11:9776655 Cone7ag0909 Cone-Chr7:7133436 1.38E-68 dispersed
Cone11ag1329 Cone-Chr11:9776655 Cone4ag1226 Cone-Chr4:10224325 4.94E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44384 PF03372 Exo_endo_phos 8.30E-11 CL0530 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag1329 - - - 0.0