Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag1361 ATGGGAACGCTCATCAATACACCTGAAATAGTTGAGTCAGTGGAAGAATCAGATTCTGTAGTAGAAACAAACGAAAATGCTGCAAATCACTATATACAAGACTCTGGAAAAAGGTGCTCGATAGAGGATGATATCAATCGTCTATTTCAGGGAATAGATATCAAAACGTCAAGTAGAGATGCTTTGCGAAAGAGTGCAATGAAAAGGCCAATTAGGCCAGGTTCATCTCAAGTGTCTGGGATTGGAATTTCCGAGCCAGTGAGTTTAAAACAGGCTCTCAGAGGATTGTGTATCTCTCAGGCAGCAGAAACAGCTGCTATGAAGAGATTGTCAAGGTCCACACGATCTTCAGGTGTGTCAGATTCCGGAACAATTAAAAGGTTGTACAGGGCAGTTGTAGTTGAGGCTGATGGATCTAGTGTTTCTATAAATGTTAAAGGTAAGGGGAATTTGGTTGAGTTCACCCTTGTTCCCGACCCCGTCAGTTCAACTTTTTCGAGGGAGATTTCTAAGTCCTTAGAGAATTCTTCCAAGGCAGAGCCATCAAATTCAGGGTCTAACACTTCTTATCCTTTGAATGACTCAATGAAACTGAAGACTAACTTGCAAATGGAGGTAGGGTCAGAATTACCAAAGGAGTTTGAAAAACTGAAGCCGGTCGAATCTTCTTCTGTTTCTCATTCTGGCAAGAAAGTCCTACCACTGGATGAAAGTATGCCAAGCAAATCGAATTGCAATAGTCCACGTTTAATCAAGCCTTTATTCAGGACCAAGAGTTTTGTGAAGAAGAAGGCAAAGCTGGAATCAAGCGCCTCCTCCAGTGCTTCCACTCCATGTATGGGAAAATCTGACACTGACTTGGGTCCCACTACAAATGATTTGGGGGTCCAGACGCCTTCTGATGCTCTTAATCACGAAAACAGGGGAATTGACAAAGCTTCACTGGAGAGCGGTGAGGTCAAGTCGAGTATGATGGAAATGTGTTCAATAAGACCGGGTCTCTCTTTTGGTTGCAATAACAGAACTAGATCACTAGGGACAAATTCTGATGAGACATCAAGATTCAGAGAAAAGGGTGAGTTCTCTCAAAGCTCGAAAAGTAGTATCGGTGATTTTAGCAGTAGCCCAAGCATTAGCGGTGAGAGCATTCTTAGTTGGTCTAGTCGAAGCGGGAATAGGGCCCACCTATCAAAAGACTTGAGATGGGAAGCCATCCGCCATGTTCAAAAGCAGCAGAAATCTGTGGGTTTCAAAGACTTTAAGATTCTTAGGAGGCTTGGTCTTGGGGATATAGGGTCTGTGTACCTTGCTGAACTAAGCGATACCAAATGTCTGTTTGCTTTGAAAGTGATGGATATGGATTTTTTGACAAGCAGGAAGAAAATTCTCAGAGCCCAAACGGAGAAAGAGATTCTTCAAATGCTGGACCACCCTTTTCTCCCTACCCTTTACACCCATTTCGAAACAGAGAAACAATCATGCTTAGTCATTGACTATTGTCCAGGTGGAGATTTACATGTTCTCCGGCAAAAACAACAAGGCCGGAATTTCCCCGAGCAAGCAACCAGATTTTATGTTGCTGAAATTCTCCTTGCCCTAGAGTATTTGCACATGCTAGGAGTAGTGTACAGGGACCTCAAACCGGAAAACATCTTGGTACGAGAAGATGGTCACATTATGCTCACAGATTTCGACTTATCACTCAGATGTGCAGCCAATACAATGGTTGTGCTTAGATCATCTTCTCCCCCCACAGTGGAGCCCACAAAAAAAACCCATTATCCATGTGATGGATCTTCTTGCATCGACCCTTTCTGTCTTCAACCATCCTGGCAAGTCCCATGTTTCACTCCTAGGCTTCTCATAACCTCGACACCACCAAAAACCCGGAAGGTGAAATCTGACCCCTTGGCCCAAGTCAGCCCACTTCCTCAGCTTGTAGTGGAGCCCACTGGGGCCCGATCCAACTCGTTCGTCGGAACCTATGAATACCTTGCTCCTGAAATCATAAAAAATGATGGGCATGGTAGTGCTGTTGATTGGTGGACTTATGGGATTTTTCTGTTCGAGCTATTGTATGGTAAGACACCCTTTAAAGGTCCCGGAAATGATGAAACTTTAGCAAACATAGTGTCACAAAGCCTCAGGTTTCCAAATACCCCTATTGTTAGTTTTCATGCACGGGACTTGATCCGTGCCCTACTAGTGAAGGAACCTGAAAATCGGTTAGGGTCTTTGAAAGGGGCGGCAGAGATAAAGCACCATCCTTTCTTCGATGGGCTTAATTGGGCTCTGATACGGTGTGCTGTCCCCCCTGAGCTGCCCAAGTTTTCCGATATCGGAGTTGGTGGACCGCAGTTAATGGGCTTGTGGAAAAAGGATGGACCCAAGCAATCAGAAGTTGAGAATATGGGGGTAGATGATCCAGTGTTTGAGATGCTTTAG 2445 44.46 MGTLINTPEIVESVEESDSVVETNENAANHYIQDSGKRCSIEDDINRLFQGIDIKTSSRDALRKSAMKRPIRPGSSQVSGIGISEPVSLKQALRGLCISQAAETAAMKRLSRSTRSSGVSDSGTIKRLYRAVVVEADGSSVSINVKGKGNLVEFTLVPDPVSSTFSREISKSLENSSKAEPSNSGSNTSYPLNDSMKLKTNLQMEVGSELPKEFEKLKPVESSSVSHSGKKVLPLDESMPSKSNCNSPRLIKPLFRTKSFVKKKAKLESSASSSASTPCMGKSDTDLGPTTNDLGVQTPSDALNHENRGIDKASLESGEVKSSMMEMCSIRPGLSFGCNNRTRSLGTNSDETSRFREKGEFSQSSKSSIGDFSSSPSISGESILSWSSRSGNRAHLSKDLRWEAIRHVQKQQKSVGFKDFKILRRLGLGDIGSVYLAELSDTKCLFALKVMDMDFLTSRKKILRAQTEKEILQMLDHPFLPTLYTHFETEKQSCLVIDYCPGGDLHVLRQKQQGRNFPEQATRFYVAEILLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCAANTMVVLRSSSPPTVEPTKKTHYPCDGSSCIDPFCLQPSWQVPCFTPRLLITSTPPKTRKVKSDPLAQVSPLPQLVVEPTGARSNSFVGTYEYLAPEIIKNDGHGSAVDWWTYGIFLFELLYGKTPFKGPGNDETLANIVSQSLRFPNTPIVSFHARDLIRALLVKEPENRLGSLKGAAEIKHHPFFDGLNWALIRCAVPPELPKFSDIGVGGPQLMGLWKKDGPKQSEVENMGVDDPVFEML 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9912074 9914618 - Conep11aG0141000.1 Cone11ag1361 448613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag1361 814 FunFam serine/threonine-protein kinase D6PK-like 653 776 - -
Cone11ag1361 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 541 553 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone11ag1361 814 ProSiteProfiles Protein kinase domain profile. 420 758 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag1361 814 Gene3D Transferase(Phosphotransferase) domain 1 500 569 - -
Cone11ag1361 814 SUPERFAMILY Protein kinase-like (PK-like) 397 775 IPR011009 -
Cone11ag1361 814 SMART serkin_6 420 758 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag1361 814 Pfam Protein kinase domain 421 573 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag1361 814 Pfam Protein kinase domain 655 758 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag1361 814 Gene3D Phosphorylase Kinase; domain 1 418 499 - -
Cone11ag1361 814 FunFam serine/threonine-protein kinase D6PK-like 504 571 - -
Cone11ag1361 814 MobiDBLite consensus disorder prediction 340 377 - -
Cone11ag1361 814 CDD STKc_phototropin_like 418 781 - -
Cone11ag1361 814 PANTHER FLIPPASE KINASE 1-RELATED 277 777 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone11ag1361 814 MobiDBLite consensus disorder prediction 218 248 - -
Cone11ag1361 814 FunFam Serine/threonine-protein kinase D6PK-like 418 503 - -
Cone11ag1361 814 MobiDBLite consensus disorder prediction 362 377 - -
Cone11ag1361 814 MobiDBLite consensus disorder prediction 271 290 - -
Cone11ag1361 814 Gene3D Transferase(Phosphotransferase) domain 1 653 776 - -
Cone11ag1361 814 MobiDBLite consensus disorder prediction 172 194 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1361 Cone-Chr11:9912074 Cone3ag0209 Cone-Chr3:1113014 2.36E-224 dispersed
Cone1ag0527 Cone-Chr1:5199629 Cone11ag1361 Cone-Chr11:9912074 5.05E-125 wgd
Cone10ag0177 Cone-Chr10:861393 Cone11ag1361 Cone-Chr11:9912074 1.25E-221 wgd
Cone11ag1025 Cone-Chr11:8118512 Cone11ag1361 Cone-Chr11:9912074 1.76E-25 wgd
Cone11ag1361 Cone-Chr11:9912074 Cone13ag1200 Cone-Chr13:9287179 1.24E-197 wgd
Cone11ag1361 Cone-Chr11:9912074 Cone18ag0217 Cone-Chr18:1076442 0 wgd
Cone11ag1361 Cone-Chr11:9912074 Cone19ag1184 Cone-Chr19:8299360 8.88E-199 wgd
Cone11ag1361 Cone-Chr11:9912074 Cone5ag1353 Cone-Chr5:8149607 4.12E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81916 PF12899 Glyco_hydro_100 1.50E-214 CL0059 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag1361 - - - 0.0