Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag1379 ATGGGTTTAATGAATTACACAGACAATCATCAAGAAAACAACATAACTTTCATTGAATGGCTCAAACCCTATTCGTCGCCATCCTCTTCTTCTTCATCTTCTTCATCTTCATCATCTTCATCATCATCATCTTCTATCCAGTGTTTGCCTCTTCTAAGCAGCTTCATGGAAACTAAGAAAGGAAGAGTTGAAGGAGAAGGAGAAGAAGAAATTGAGAAGGTTAAAGTGGGCTTGCAAATTGGGCTGCCAAACATTAATGAAGATTGTGGCGATTATAATTCTCGTCCGAATTATAATATTCTTAAGAACGAAGAGGAAGAAGATGAAGATCAAGTGATCATTAAAAGAAGTTTTCATGGTTTGAACTCGTTTAGAAGCGAGAGTACGAGGTTTTGGATCCCAACTCCTGCACAAATCCTTGTTGGACCAATGCAGTTTGCTTGTTCTATTTGCAGCAAAACATTCAATAGGTACAATAACATGCAGATGCATATGTGGGGACATGGATCCGAATACCGAAAAGGACCGGATTCACTAAGAGGAACACAGCCAGCAGCAATGTTGAGGCTACCATGTTACTGTTGTGCACAAGGTTGCAAGAACAACATAAACCATCCAAGAGCTAAGCCATTGAAGGATTTCAGGACACTTCAAACACATTACAAAAGAAAGCATGGGGCGAAGCCATTCTGTTGCAGGAAGTTATGTGGGAAAACTTTTGCTGTCAAAGGAGATTGGAGAACCCATGAGAAGAATTGTGGGAAGTTGTGGTATTGCATCTGTGGTTCTGATTTCAAACACAAGAGATCACTCAAAGATCATGTTCGATCTTTCGGAAACGGCCATTCACCAATCCCTCCTCTCGATCATGATGATGATCATAGATTTGATCAAGATGATAAGGAGTGCATTACTGGGTCTGAAGATGATCAGTAA 936 40.17 MGLMNYTDNHQENNITFIEWLKPYSSPSSSSSSSSSSSSSSSSSSIQCLPLLSSFMETKKGRVEGEGEEEIEKVKVGLQIGLPNINEDCGDYNSRPNYNILKNEEEEDEDQVIIKRSFHGLNSFRSESTRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEYRKGPDSLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFCCRKLCGKTFAVKGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVRSFGNGHSPIPPLDHDDDHRFDQDDKECITGSEDDQ 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10001837 10003124 - Conep11aG0142800.1 Cone11ag1379 448631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag1379 311 FunFam Zinc finger protein WIP2 199 282 - -
Cone11ag1379 311 Gene3D Classic Zinc Finger 145 168 - -
Cone11ag1379 311 ProSiteProfiles Zinc finger C2H2 type domain profile. 146 173 IPR013087 -
Cone11ag1379 311 SUPERFAMILY beta-beta-alpha zinc fingers 142 169 IPR036236 -
Cone11ag1379 311 ProSitePatterns Zinc finger C2H2 type domain signature. 148 168 IPR013087 -
Cone11ag1379 311 SUPERFAMILY beta-beta-alpha zinc fingers 216 251 IPR036236 -
Cone11ag1379 311 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 229 254 - -
Cone11ag1379 311 Pfam Zinc finger, C2H2 type 146 165 IPR013087 -
Cone11ag1379 311 PANTHER ZINC FINGER PROTEIN WIP2 17 299 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1379 Cone-Chr11:10001837 Cone6ag0465 Cone-Chr6:2295739 3.46E-104 dispersed
Cone11ag1379 Cone-Chr11:10001837 Cone18ag0207 Cone-Chr18:1021453 4.57E-189 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44387 PF04765 DUF616 5.40E-82 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag1379 - - - 0.0