Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag1384 ATGGCGAGTCGTCATGGAGTTGAAGAGAGAGCAGCAGGTCTATCAGAATCATCAAGACCAGCCAGCTCCATTAATCATCATCATCATCTACCAGCGTATGCTCTTCTCCATCACGGGCTTTCTCATAATAATATTAATCCTCCAAATAATTTCATTTCGAGTGGTCAAGAAGGATCAGGAGCTTTTGATTTTGGAGAGCTGGAAGAAGCGATTGTTCTTCAAGGAGTTAATAATAAGACTAATAATCTTGTAGATGATGATGATCATCATCATCATACTTATCAACCCAAAGCACTTGCAGCTTTTTACACAGCAAAACCTTCTGCTACTCTGGAAATGTTCCCGTCATGGCCAATTAGATCATTTCAACAAACTCCAAGAGGAAGCTCAAAATCAGGTGGGGGTGAAAGCACCGATTCAGGATCAGCTGTGAACAATCTTACTACAAGCAAAGCAGCAGCAGCAGCAGCTGCTGCTATGGCCCACTTATTAGAAGAAGAAGAAGACCCTGAATCTCCAATTAGCAATAATCATAGAGACATATCATCATACTCTAATTCAGATCATCATCATCATCATCATCATTATCAGAGATTTGGTCAGAAGATATTGCAGCCTGAGATGATGACCACAGAAGATCGTGATAATCATGAATCTACTTCCAAATCACTACAAGATCAAAAGAGGAAAGGATCAGCTGGTTCAACTTCAGAAAAGAAACTGGATGCTAAGACACTCAGACGATTAGCTCAAAACAGAGAAGCAGCAAAGAAGAGCCGCCTTAGAAAAAAGGCTTATGTACAGCAACTAGAATCAAGTAGACTTAAGCTCAATCAGCTTGAACAAGACCTCCAACGTGCTCGCTCTCAGGGGTTGATTTTTGGTGCTGCCGGAGGCAATATTAGTTCCGGGGCAGCAATATTTGATATGGAGTATGCGAGATGGCTCGAAGACGACCACCGTCACATGGCGGAACTAAGATCAGGCCTACAAGCGCATTTAACTGATGCCGATCTTCGAGTTATCATTGATGGTTATATCTCCCACTACGATGAAATATTCCAATTAAAAGGGGTCGCCGCAAAATCCGATGTCTTTCATCTCATCACCGGAATGTGGATTACTCCGGCCGAGCGCTGCTTCCTCTGGATGGGCGGTTTCCGCCCTTCTGACCTCATCAAGATGCTGAAAGTACAGTTAGACCCGTTAACGGAACAACAGATGATGGGGATATATAAGCTACAACAATCGTCACAACAGGCAGAAGATGCTCTTTCTCAGGGGCTCGACCAGCTCCACCAATCTCTCGTCGATACCATTGCGGCGGGCCCGCTTATGGACGGAATGAACCAGATGGCTCTTGCTATAGGCAAGCTATCCAACCTAGAAGGCTTTGTTCGTCAGGATTGGGATCTATATATCGTTGCTTTGCTTCTAAGGACTTCATTAGTTAATCCCGTTTTTTAA 1467 43.69 MASRHGVEERAAGLSESSRPASSINHHHHLPAYALLHHGLSHNNINPPNNFISSGQEGSGAFDFGELEEAIVLQGVNNKTNNLVDDDDHHHHTYQPKALAAFYTAKPSATLEMFPSWPIRSFQQTPRGSSKSGGGESTDSGSAVNNLTTSKAAAAAAAAMAHLLEEEEDPESPISNNHRDISSYSNSDHHHHHHHYQRFGQKILQPEMMTTEDRDNHESTSKSLQDQKRKGSAGSTSEKKLDAKTLRRLAQNREAAKKSRLRKKAYVQQLESSRLKLNQLEQDLQRARSQGLIFGAAGGNISSGAAIFDMEYARWLEDDHRHMAELRSGLQAHLTDADLRVIIDGYISHYDEIFQLKGVAAKSDVFHLITGMWITPAERCFLWMGGFRPSDLIKMLKVQLDPLTEQQMMGIYKLQQSSQQAEDALSQGLDQLHQSLVDTIAAGPLMDGMNQMALAIGKLSNLEGFVRQDWDLYIVALLLRTSLVNPVF 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10034801 10038704 - Conep11aG0143300.1 Cone11ag1384 448636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag1384 488 MobiDBLite consensus disorder prediction 165 246 - -
Cone11ag1384 488 MobiDBLite consensus disorder prediction 232 246 - -
Cone11ag1384 488 ProSiteProfiles DOG1 domain profile. 305 488 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone11ag1384 488 FunFam BZIP family transcription factor 243 292 - -
Cone11ag1384 488 Gene3D - 243 291 - -
Cone11ag1384 488 Pfam Seed dormancy control 322 396 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone11ag1384 488 MobiDBLite consensus disorder prediction 1 24 - -
Cone11ag1384 488 SMART brlzneu 240 302 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag1384 488 Pfam bZIP transcription factor 243 284 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag1384 488 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 242 286 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag1384 488 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 247 262 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag1384 488 PANTHER TRANSCRIPTION FACTOR TGA9 194 469 - -
Cone11ag1384 488 SUPERFAMILY Leucine zipper domain 244 286 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag1384 488 CDD bZIP_HBP1b-like 244 295 - -
Cone11ag1384 488 Coils Coil 263 290 - -
Cone11ag1384 488 MobiDBLite consensus disorder prediction 208 225 - -
Cone11ag1384 488 MobiDBLite consensus disorder prediction 120 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1384 Cone-Chr11:10034801 Cone13ag0546 Cone-Chr13:5710710 6.58E-89 dispersed
Cone1ag0533 Cone-Chr1:5313450 Cone11ag1384 Cone-Chr11:10034801 1.59E-109 wgd
Cone11ag1384 Cone-Chr11:10034801 Cone18ag0202 Cone-Chr18:998637 2.82E-213 wgd
Cone11ag1384 Cone-Chr11:10034801 Cone5ag1347 Cone-Chr5:8085681 5.06E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44388 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag1384 K14431 - mdm:103453345 486.108