Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag1421 ATGGAAGATAAAGTTGATGTTCCGTCTCATTTCCTATGTCCAATCTCTCTACAACTCATGAGAGATCCCGTTACGATCTCAACCGGGATATCTTACGATCGAGAAAGCATCGAAAGATGGTTGTTTTCATGCAGAAATCAGATATGTCCGGTAACAAAACAACCCTTATTAGATACTACAGATCTAACACCAAATCACACGCTACGTCGATTGATTCAATCATGGTGTATTCTCAATGCATCATCCGGTATCGAGCGAATCCCGACACCGAAACTGCCAGCCGACAGAACCCGAATCGTCAGGATTCTCAATGAAGCAAAGAAGTTTCCGAACTCAACCCTCGAATGTCTTCAAACACTTAGATCTATTGTTCTAGAAAGTGAGAGAAGTAGAAGCTTCTTGGAATCGTCCGGAGGGGTAGAGTTCTTGGCTTCAGTCATGAAGAAGTATCGTGATCATGAAGGTGATTTGACTGTCTTAGAAACAGCCGTTGAAGTTCTTTTCAACCTTCACTCTTCAGAAAGCCGTCTCAAGAGTGTCGTGAACAATGAAGAACATGAGATTATAGAGTCATTAACACAAGTATTGAAGATTGGGAGCTATCAATCTAGAGCACATGCAATAATGGTAGTGAAGTCTATCTTCCAGGTAGCTGATCCGATTCAATTAATCAATGTCAAAAACCAACTTTTTATTGAGTCAGTAAGAGTGTTGAAAGATCAAATTTCTCAACAAGCATCCAAGGCTTCATTGAAGCTTTTAGTAGAGCTTTGTCCATGGGGAAGAAATAGGATCAAAGCGGTCGAAACAGATGCGGTTTTCGTGTTGATTGAGATTCTCTTAAACTCGTCCGAAAGGAAGGTTTGTGAACTTAGCCTTGTGGTTTTGGACTTGCTTTGTGGGTGTGCAGAAGGGAGAGCTATGTTCTTGGAGCATGGTGGCGGGATGGCAATCGTGGGCAAGAAGATCTTTCGGGTTTCACATTTGGCAAGTGATAGATCTGTGAGGATTTTCTGTTCAATTTCTCGGTTTTGTGCAAGTTCTAGGGTTCTTCAAGAGATGTTGCAAGTTGGTGTTGTGTCAAAGTTGTGTTTGGTGATGCAAGTGGATTGTAGTTCGAAGATGAAGGAAAGGGCAAAAGAGATTTTGAATTTGCATTCTAGGGTTTGGAAGTATTCTACTTGTATTCCTTCTTATTTGTTGTCTTCTTACCCATCTCATTGA 1224 41.18 MEDKVDVPSHFLCPISLQLMRDPVTISTGISYDRESIERWLFSCRNQICPVTKQPLLDTTDLTPNHTLRRLIQSWCILNASSGIERIPTPKLPADRTRIVRILNEAKKFPNSTLECLQTLRSIVLESERSRSFLESSGGVEFLASVMKKYRDHEGDLTVLETAVEVLFNLHSSESRLKSVVNNEEHEIIESLTQVLKIGSYQSRAHAIMVVKSIFQVADPIQLINVKNQLFIESVRVLKDQISQQASKASLKLLVELCPWGRNRIKAVETDAVFVLIEILLNSSERKVCELSLVVLDLLCGCAEGRAMFLEHGGGMAIVGKKIFRVSHLASDRSVRIFCSISRFCASSRVLQEMLQVGVVSKLCLVMQVDCSSKMKERAKEILNLHSRVWKYSTCIPSYLLSSYPSH 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10164764 10165987 - Conep11aG0147000.1 Cone11ag1421 448673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag1421 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Cone11ag1421 407 SUPERFAMILY RING/U-box 4 79 - -
Cone11ag1421 407 PANTHER WDSAM1 PROTEIN 4 402 IPR045185 GO:0061630(InterPro)
Cone11ag1421 407 SMART Ubox_2 10 75 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone11ag1421 407 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone11ag1421 407 Gene3D - 97 390 IPR011989 -
Cone11ag1421 407 FunFam RING-type E3 ubiquitin transferase 1 85 - -
Cone11ag1421 407 Pfam U-box domain 7 76 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone11ag1421 407 CDD RING-Ubox_PUB 8 60 IPR045210 -
Cone11ag1421 407 SUPERFAMILY ARM repeat 111 382 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1421 Cone-Chr11:10164764 Cone3ag0136 Cone-Chr3:756341 9.43E-163 dispersed
Cone1ag0559 Cone-Chr1:5661593 Cone11ag1421 Cone-Chr11:10164764 1.96E-79 wgd
Cone10ag0123 Cone-Chr10:628654 Cone11ag1421 Cone-Chr11:10164764 1.04E-164 wgd
Cone11ag1421 Cone-Chr11:10164764 Cone13ag1136 Cone-Chr13:9000613 5.04E-13 wgd
Cone11ag1421 Cone-Chr11:10164764 Cone18ag0170 Cone-Chr18:886262 2.07E-264 wgd
Cone11ag1421 Cone-Chr11:10164764 Cone19ag0427 Cone-Chr19:3532185 1.22E-134 wgd
Cone11ag1421 Cone-Chr11:10164764 Cone5ag1317 Cone-Chr5:7662685 2.14E-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag1421 - - - 0.0