Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag1428 ATGGGTGTCTCGGGAAAATGGATTAAAAACTTGGTCGGTTTTAAAAAATCCGAAAAATCGCCCTCTTCAGAGAAGGGTGAAAATAAAACATCTGGAATCAAGTTTCTGCATCGGGGAAAGAATTCGGTTGAGATTGATGCAGACACACAGAAATACGGGTTTGATCAACAGTATAGCCCATTAGTTGGAGAAGTTAAAACCCATTCAAATTCAGATGCTGCTGGTTCACCTTCTAATTCAATTCCCTTACGTGAAAAGTCACATAGTCAGCTGATTGATAGAGAAGAATGGGCTGCTACACGCATCCAAACAGCGTTCCGAGGATTTCTGGCTAAAAGAGCACTCCGAGCTTTGAAAGGATTAGTAAGACTTCAAGCTCTTGTCAGGGGACATGCTGTCAGAAAACAAGCTGCTATAACTCTTCGCTGTATGCAAGCTTTAGTTAGAGTCCAGGCTCGTGTACGTGCAAGGCATGTTCGTCTTGCACTAGAAAGTGAAACAGTGCAACAAAAACTTCAACAACAACATGAAAATCAAGCTCATGTTCGAGAAATCGAAGAAGGGTGGTGTGATGGTGCGGGATCAGTCGAACAAATTCAAGCCAAGTTGTTGAAGAGGCAGGAGGCTGCAGCTAAGCGCGAGAGAGCCATGGCATATGCTCTAGCTCATCAGTGGCAAGCAGGATCAAGGCAGCGATCTACTCCTGGGTTTGAACCTGATAAAAGTGGGTGGGGTTGGAATTGGTTGGAAAGATGGATGGCTGTTCGTCCATGGGAAAACCGTTTTCTAGATATTAATCTAAGAGATGGAATGACGGGAAGTAATAATGAATCAGTTGAAGGTAAAAATAATAATGGCATTCAATCTCAGGTAAAACCTGCTACTGGCAAGAAACCAAATGTATCAACTGTTCATTCAAATATCTCAAGCCAGAAAACAGGCCCCTCCCACTCAGATGGATGTGGTTCCTCCTCACCAAACAAGTCGGCAAGCACAGTAGAACAGAACGGGGCGCAGTTTTCAAAGCCAAAGTTCAAGCCTCTTGATGAAAATACTGTAAAAGAAGCCAACTCAAGATCCAAAAGTAATCCGAAAGAGAGATCCAGAATACCCAATAAACCAGCCAAAAAGCGTTTATCTCTTCCTAATAGCGGTGGAAGTCCCAGAACCCTGGCTCTCTTTCAAGGATAA 1191 43.41 MGVSGKWIKNLVGFKKSEKSPSSEKGENKTSGIKFLHRGKNSVEIDADTQKYGFDQQYSPLVGEVKTHSNSDAAGSPSNSIPLREKSHSQLIDREEWAATRIQTAFRGFLAKRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARHVRLALESETVQQKLQQQHENQAHVREIEEGWCDGAGSVEQIQAKLLKRQEAAAKRERAMAYALAHQWQAGSRQRSTPGFEPDKSGWGWNWLERWMAVRPWENRFLDINLRDGMTGSNNESVEGKNNNGIQSQVKPATGKKPNVSTVHSNISSQKTGPSHSDGCGSSSPNKSASTVEQNGAQFSKPKFKPLDENTVKEANSRSKSNPKERSRIPNKPAKKRLSLPNSGGSPRTLALFQG 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10201611 10204973 - Conep11aG0147700.1 Cone11ag1428 448680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag1428 396 FunFam IQ-domain 11 94 145 - -
Cone11ag1428 396 MobiDBLite consensus disorder prediction 274 396 - -
Cone11ag1428 396 MobiDBLite consensus disorder prediction 67 87 - -
Cone11ag1428 396 MobiDBLite consensus disorder prediction 67 86 - -
Cone11ag1428 396 Gene3D - 92 146 - -
Cone11ag1428 396 ProSiteProfiles IQ motif profile. 119 146 - -
Cone11ag1428 396 ProSiteProfiles IQ motif profile. 95 123 - -
Cone11ag1428 396 PANTHER IQ-DOMAIN 5-RELATED 5 369 - -
Cone11ag1428 396 Pfam IQ calmodulin-binding motif 97 116 IPR000048 GO:0005515(InterPro)
Cone11ag1428 396 MobiDBLite consensus disorder prediction 274 339 - -
Cone11ag1428 396 MobiDBLite consensus disorder prediction 347 370 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag1428 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1428 Cone-Chr11:10201611 Cone20ag0275 Cone-Chr20:1221713 2.19E-47 dispersed
Cone1ag0388 Cone-Chr1:3380608 Cone11ag1428 Cone-Chr11:10201611 3.71E-141 wgd
Cone11ag1428 Cone-Chr11:10201611 Cone14ag1038 Cone-Chr14:8768237 1.38E-26 wgd
Cone11ag1428 Cone-Chr11:10201611 Cone18ag0162 Cone-Chr18:847631 1.10E-229 wgd
Cone11ag1428 Cone-Chr11:10201611 Cone5ag1312 Cone-Chr5:7581605 7.19E-131 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g808 Blo03g01027 . . . . . Bma14g00379 Bma07g01423 Cmo10g00895 Cmo11g00931 Cma10g00857 . . . . . Cpe18g00165 . . . . . . . . . . . . . . . Cone5ag1312 Cone18ag0162 Cone11ag1428 Lsi06g00645 . . . . . . Bda09g00275 . Bpe11g00883 . Bma11g00338 . . . Cma11g00912 . . . . . . . . . . . . Cla03g01384 Cam03g1463 Cec03g1500 Cco03g1495 Clacu03g1486 Cmu03g2044 Cre03g1715 . Csa01g03281 Chy02g01601 Cme02g00846
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone5ag0328 . 91 268 IQD Protein Family AT3G09710 53.7 1.9e-48 191.0
Cone18ag0502 . 1 459 IQD Protein Family AT3G52290 53.2 6.7e-93 338.6
Cone5ag0328 . 73 293 IQD Protein Family AT2G26410 52.0 6.2e-48 189.5
Cone18ag0162 . 1 392 IQD Protein Family AT3G22190 59.9 3.4e-97 352.8
Cone11ag1428 . 1 385 IQD Protein Family AT3G22190 59.1 7.3e-92 335.1
Cone1ag0388 . 1 397 IQD Protein Family AT3G22190 53.0 1.4e-90 330.9
Cone5ag1312 . 1 397 IQD Protein Family AT3G22190 51.6 2.3e-85 313.5
Cone4ag1669 . 2 415 IQD Protein Family AT2G26180 57.2 2.9e-101 366.3
Cone20ag0275 . 4 391 IQD Protein Family AT2G26180 58.8 2.5e-100 363.2
Cone17ag0933 . 4 391 IQD Protein Family AT2G26180 57.0 7.5e-97 351.7
Cone14ag1038 . 44 231 IQD Protein Family AT2G33990 54.5 1.3e-43 174.1
Cone14ag1038 . 19 228 IQD Protein Family AT3G15050 55.2 2.3e-51 199.9
Cone15ag1024 . 36 229 IQD Protein Family AT3G15050 56.2 5.0e-51 198.7
Cone18ag0985 . 1 527 IQD Protein Family AT4G00820 50.4 4.6e-115 412.5
Cone4ag0762 . 1 383 IQD Protein Family AT3G16490 50.3 3.0e-63 240.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004215 1 3 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 1 42