Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag1432 ATGGAAATGATGGCATCAGATCGAGTTTGTTATGTGCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTGCCATGCAGCAACATGTTCGCCATTGTTACCGTCAGATGCGGGCATTGTGCCAATTTGCTCTCTGTCAATATGGCTGCTTCTCTAGTTCCCACTTCTTCCCAAGAACATAACCAGTACGCCGGCCAGGTCAATATAACAAGCTCCGATCATCATGATCGCAATTCGATTTATAAGGAGATGACCGGATCATCTTCTAAATGCAACAAGTTGGGATCAGGATTGGATCAGTATGTTGTAGAGCATGATCAACAACCACCTAGAACCCCTCCTATCCCACCACCAGAGAAAAGACAACGGGTTCCTTCTGCATATAACAGGTTTATCAAAGAGGAAATTCAAAGGATTAAAGCTAGTAATCCAGAAATAAGCCACAGAGAAGCCTTTAGCACTGCTGCCAAAAATTGGGCACATTTTCCTCACATTCACTTTGGGCTAAAGCTGGCTCATGGAAATCAGCAATCAACTTGA 543 43.83 MEMMASDRVCYVHCNFCNTILAVSVPCSNMFAIVTVRCGHCANLLSVNMAASLVPTSSQEHNQYAGQVNITSSDHHDRNSIYKEMTGSSSKCNKLGSGLDQYVVEHDQQPPRTPPIPPPEKRQRVPSAYNRFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPHIHFGLKLAHGNQQST 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10218346 10221841 - Conep11aG0148100.1 Cone11ag1432 448684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag1432 180 MobiDBLite consensus disorder prediction 106 125 - -
Cone11ag1432 180 CDD HMG-box_SF 124 160 - -
Cone11ag1432 180 FunFam axial regulator YABBY 5-like 107 166 - -
Cone11ag1432 180 Pfam YABBY protein 5 170 IPR006780 GO:0007275(InterPro)
Cone11ag1432 180 PANTHER PROTEIN YABBY 6-RELATED 5 178 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010158(PANTHER)|GO:0045165(PANTHER)
Cone11ag1432 180 Gene3D High mobility group box domain 107 165 IPR036910 -
Cone11ag1432 180 SUPERFAMILY HMG-box 112 163 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1432 Cone-Chr11:10218346 Cone6ag0698 Cone-Chr6:3531312 7.26E-57 dispersed
Cone1ag0390 Cone-Chr1:3399838 Cone11ag1432 Cone-Chr11:10218346 3.50E-39 wgd
Cone11ag1432 Cone-Chr11:10218346 Cone18ag0157 Cone-Chr18:828939 6.85E-91 wgd
Cone11ag1432 Cone-Chr11:10218346 Cone5ag1310 Cone-Chr5:7541587 1.24E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44393 PF04535 DUF588 3.60E-16 CL0396 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag1432 K25796 - csv:101222154 218.779