Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag1473 ATGGAGAGACTTATGATGGGTGATGACTCATTGGGCGATAGTTCCGATCTAGAAGTTGATGATATAAGGATTGAAAACATTGCGGAAAAAGACGTTAGTGATGAAGAAATCGAACCGGAGGAATTGGAAAAGAGGATGTGGAAGGACCGGATCAAGCTTAAAAGGATCAAGGATAAACAGAAGCTCGAGGCCCAACAAGCAGCCGAGAAGCAACAGAAACCGAAACAGACTTCAGATCAGGCCCGAAGGAAGAAAATGTCTAGAGCCCAAGATGGGATTCTCAAGTACATGTTGAAGTTGATGGAAGTTTGCAAAGCCCGTGGGTTCGTTTATGGTATCATCCCAGAAAAGGGAAAGCCCGTTAGCGGCTCATCTGATAACATCCGGGCTTGGTGGAAAGAAAAGGTCAAGTTTGACAAGAACGGGCCTGCTGCTATAACCAAATATGAAGCGGAGTGTCTTGCAATGGGAGAGGCAGAGAATAACCGGAACAGGAATTCTCAGAACATTCTTCAAGACCTTCAAGATGCTACTCTTGGGTCTCTTTTGTCTTCTTTAATGCAACATTGCGACCCACCTCAAAGGAAATTTCCATTAGAGAAGGGGGTCCCACCGCCTTGGTGGCCGACTGGGAACGAAGATTGGTGGATCAAACTCGGGCTGCCGCACGGACAGGTCCCTCCGTATAAGAAGCCACACGATTTGAAGAAGATATGGAAAGTCGGAGTTTTAACAGCTGTGATTAAGCATATGTCGCCTGATATTGCCAAGATAAGAAGACACGTTAGACAATCAAAGTGCTTGCAAGATAAGATGACGGCAAAAGAGAGTGTGATTTGGTTAGGGGTTTTAAGCCGAGAAGAGTCTTTGATGAGACAACCTAGCTGTGATAATGATTCGTCTGGAGTAACTGAGACGCCTCCATGTGGTGGGAGGGGAAAGCAGGCAGCAGTTAGTAGTGATAGCGACTATGATGTTGACGGTGCTGAAGATGGGCTTGGCTCGGTTTCATCTAAAGATGATAGGAGAAGTCAATCTGTGGACGTGAACCCGCTCGTGCAAGAGAAAAAACAGGATGAAAAACAACCTAGGAGGAAACGACCTCGTACCAAGTCAAACGAAAACCCGGCCGGTGAAGTTGGTCAAGTTCCAGCCCCATCTCCTCTAAACCCATCCCTGGATATTAAGCACTTGGATGTTCAATTAGTTGGGCATAACGAGACGATTAATGGGTCGATGCCTCCTATGGAGGAAGATTGTGCAATTGAGACGCATTTAGCGGGAACAACAGATTTCAATAATTTATTGGGACTAGGTTCGGAGGATGTGATTTCTACTCAGAGCATGTTTGTTGATGGAAGGCCGTTACTGGGTCCTGCAATTCGAAATACAGAGATGCATCATGGGATTTCTTACAATGCTTATTATCATCATCATAATCCGTTGATGGATTACCAGTCTCAGATTGGTATGCAAGGGCAGCAACCTCAGATAAGAGCTGAAAATGGCTTACCACCTGGAAATGAGGTAGTGCTTAATGGAGGAGGAGAGTTGAATTATTACATAAATCATAGTGAACCGGATAGACCGGTTGATACCCAGTTTGGGTCTCCGATTAATAGCCTGTCATTAGACTTTGGAGGGTTTAGTGATAGCCCCTTCGATCTTGGAATTGATGGTACGGGTACCTTTGATGATCTTATGCTCGATGATGATTTGATGGAGTGTTTCGGATCCTAG 1740 45.23 MERLMMGDDSLGDSSDLEVDDIRIENIAEKDVSDEEIEPEELEKRMWKDRIKLKRIKDKQKLEAQQAAEKQQKPKQTSDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGSSDNIRAWWKEKVKFDKNGPAAITKYEAECLAMGEAENNRNRNSQNILQDLQDATLGSLLSSLMQHCDPPQRKFPLEKGVPPPWWPTGNEDWWIKLGLPHGQVPPYKKPHDLKKIWKVGVLTAVIKHMSPDIAKIRRHVRQSKCLQDKMTAKESVIWLGVLSREESLMRQPSCDNDSSGVTETPPCGGRGKQAAVSSDSDYDVDGAEDGLGSVSSKDDRRSQSVDVNPLVQEKKQDEKQPRRKRPRTKSNENPAGEVGQVPAPSPLNPSLDIKHLDVQLVGHNETINGSMPPMEEDCAIETHLAGTTDFNNLLGLGSEDVISTQSMFVDGRPLLGPAIRNTEMHHGISYNAYYHHHNPLMDYQSQIGMQGQQPQIRAENGLPPGNEVVLNGGGELNYYINHSEPDRPVDTQFGSPINSLSLDFGGFSDSPFDLGIDGTGTFDDLMLDDDLMECFGS 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10471156 10474022 + Conep11aG0152300.1 Cone11ag1473 448725

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag1473 579 MobiDBLite consensus disorder prediction 353 373 - -
Cone11ag1473 579 MobiDBLite consensus disorder prediction 290 392 - -
Cone11ag1473 579 Pfam Ethylene insensitive 3, DNA-binding domain 40 288 IPR047091 GO:0003700(InterPro)
Cone11ag1473 579 FunFam Ethylene insensitive 3-like 1 162 298 - -
Cone11ag1473 579 Gene3D - 160 299 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cone11ag1473 579 Gene3D - 75 151 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cone11ag1473 579 FunFam Ethylene insensitive 3-like 1 75 153 - -
Cone11ag1473 579 MobiDBLite consensus disorder prediction 60 86 - -
Cone11ag1473 579 SUPERFAMILY DNA-binding domain of EIN3-like 169 292 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cone11ag1473 579 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 15 469 IPR006957 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag1473 K14514 - - csv:101210347 696.041
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1473 Cone-Chr11:10471156 Cone5ag0446 Cone-Chr5:1893514 7.50E-114 dispersed
Cone11ag1473 Cone-Chr11:10471156 Cone18ag0117 Cone-Chr18:603819 6.68e-314 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone11ag1551 . 1 623 EIL Transcription Factor Family AT2G27050 58.2 4.7e-190 661.8
Cone18ag0042 . 5 599 EIL Transcription Factor Family AT2G27050 59.9 1.1e-189 660.6
Cone5ag0446 . 7 512 EIL Transcription Factor Family AT2G27050 59.2 4.9e-155 545.4
Cone1ag1457 . 7 505 EIL Transcription Factor Family AT2G27050 58.2 6.2e-150 528.5
Cone11ag0985 . 5 490 EIL Transcription Factor Family AT2G27050 55.1 1.5e-135 480.7
Cone18ag0594 . 5 490 EIL Transcription Factor Family AT2G27050 54.9 5.7e-135 478.8
Cone11ag1473 . 75 330 EIL Transcription Factor Family AT2G27050 66.0 1.3e-91 334.7
Cone18ag0117 . 76 330 EIL Transcription Factor Family AT2G27050 64.5 3.3e-90 330.1
Cone18ag0117 . 79 327 EIL Transcription Factor Family AT5G21120 50.4 6.1e-72 269.2
Cone11ag1473 . 79 327 EIL Transcription Factor Family AT5G21120 51.2 1.0e-71 268.5
Cone11ag1473 . 74 551 EIL Transcription Factor Family AT1G73730 56.0 1.0e-133 474.6
Cone18ag0117 . 78 559 EIL Transcription Factor Family AT1G73730 56.0 2.8e-131 466.5
Cone18ag0042 . 13 309 EIL Transcription Factor Family AT1G73730 64.2 1.3e-107 387.9
Cone11ag1551 . 37 333 EIL Transcription Factor Family AT1G73730 63.3 2.4e-106 383.6
Cone1ag1457 . 39 329 EIL Transcription Factor Family AT1G73730 62.8 7.1e-103 372.1
Cone5ag0446 . 41 332 EIL Transcription Factor Family AT1G73730 61.5 1.6e-102 370.9
Cone11ag0985 . 47 348 EIL Transcription Factor Family AT1G73730 60.5 1.2e-94 344.7
Cone18ag0594 . 47 315 EIL Transcription Factor Family AT1G73730 63.9 3.7e-91 333.2
Cone11ag1551 . 2 623 EIL Transcription Factor Family AT3G20770 60.1 2.5e-205 712.6
Cone18ag0042 . 5 599 EIL Transcription Factor Family AT3G20770 61.8 1.4e-203 706.8
Cone5ag0446 . 6 512 EIL Transcription Factor Family AT3G20770 59.2 9.7e-157 551.2
Cone1ag1457 . 6 536 EIL Transcription Factor Family AT3G20770 55.7 1.2e-154 544.3
Cone11ag0985 . 7 520 EIL Transcription Factor Family AT3G20770 51.1 2.4e-131 466.8
Cone18ag0594 . 7 525 EIL Transcription Factor Family AT3G20770 51.5 1.2e-130 464.5
Cone11ag1473 . 75 330 EIL Transcription Factor Family AT3G20770 67.3 5.2e-94 342.8
Cone18ag0117 . 76 330 EIL Transcription Factor Family AT3G20770 66.8 2.9e-92 337.0
Cone18ag0117 . 84 299 EIL Transcription Factor Family AT5G65100 58.8 5.5e-71 266.2
Cone11ag1473 . 84 299 EIL Transcription Factor Family AT5G65100 58.8 7.2e-71 265.8
Cone5ag0446 . 33 297 EIL Transcription Factor Family AT5G10120 58.5 7.4e-85 312.0
Cone1ag1457 . 33 297 EIL Transcription Factor Family AT5G10120 57.8 1.6e-84 310.8
Cone11ag1551 . 31 297 EIL Transcription Factor Family AT5G10120 56.7 1.1e-83 308.1
Cone11ag1473 . 78 291 EIL Transcription Factor Family AT5G10120 59.8 1.9e-72 270.8
Cone18ag0117 . 78 289 EIL Transcription Factor Family AT5G10120 59.4 2.1e-71 267.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008299 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44395 PF01433 Peptidase_M1 3.10E-41 CL0126 Cone TF