Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag1488 ATGGCTGAGACTCCAAAGAAGAGCATCCGATCCCCAAATAAAACAAAACGTTTATCTCCACTTAATCTCAAATCGACACCCTCCCTCACTCCTGCAACGCCACAAACCCTAATTCCTCGCCGATCCCCTCGTTGGACATCACTAAGGTTCGATTATGCCTTTCCTTCTAAACCAATCGATCAGTCTGAGTATCAAACCAGAGAATCAGTTAAGCCGTCAAGAGACGTGAAGAGAACTCCTCGAAGATCGATTAGCTATGCTGAAGAAAAATCCTCTGGAGGTTTGGGGAACACCCCAAGGAATGGGAAATCTCGTGAAATTTCAAGTCCTCAAACTAAAACTGAAAAATATGATGAATCGACTAAAGGGACTAAGAGTTTGAAGCGCAAAAATGGGAATGAGTCGAATGAAGTTTCCTTCTACCCGAAATCTCCAGAACAATCAGAGACTAAGAAGAGGAAAAGGAGTAATGGAAGAACAGTAGTTACAAGGGCTACAGCTTCAACGAATTCGATTACAGAGAAAAGGAAAACGAGCAGCCAGATTACATCAAAGAGACGGGTATACTACAAGAAGGTGGTGTATGATGGCGGCGAATTCGAAGTAGGGGATAATGTTTATGTGAAGAGGAGAGAAGATGCCAGCTCGGACAATGAAGACCCTGAAGTAGAGGAGTGTAGAGTGTGCTTCAGGTCCGGAAAGGCTATAATGATTGAATGTGATGATTGTTTAGGTGGATTTCATTTGAAGTGTTTGAAGCCGCCATTAGTAGAGGTTCCAGAGGGTGATTGGATTTGTAGGTTTTGCGAGGCTCGAAAAATGGGTAAACAGATTGAGCTTCCAAAGCCTCCAAAGGGGAAGAAAAGGGTCCGGACTATGAGGGAGAAGCTTCTTTCAGGGGATCTGTGGGCCGCCCGAATTGAAAGCTTATGGAAAGAAGATGGTACCTATTGGTGCCGGGTGCAGTGGTACATAATCCCGGAAGAGACTGCAGCTGGAAGACAACCTCATAATCTGAGGAGGGAGCTGTATCTTACAAATGATTTAGCTGACATTGAGACAGAATCAATTCTTCGGCAGTGTCAGGTCATGATCCCGAAGGAATATGCAAAAGCCAATGAAGGGGATGATATCTTTCTATGCGAATATGAATATGACATCCATTGGCATAGTTATAAGCGTCTTGCTGATATTGAAACTGAAGAAGAGGCTGGGGTGGAAGCAGAAAGTGATGACGAATGGAAATTGGGTAAGGATGCGGACTCTGATACAGATGAAGATGTGGAATATGAAGAAGAGGAATTGACAAGTCTAAAAGCCAGACCGTCCTCAACTCAAGAGTTGGCTGCAAATTCAAGGAAGGGACAGTTCTTTGGACTTCAAAAGATAGGGACAAAGAAAATTCCAGAGCATGTAAGATGCCACAAGAAGACAGAATTGGAAAAGGCAAAAGCAACACTCCTGTTAACATCGTTACCTAAGTCTCTACCTTGCAGGAATAAAGAAATGGAGGAGGTAACTGCATTTATAAAAGGTGCCATATGTGATGATGAGTGCCTGGGACGATGCCTGTATGTTCATGGTGTTCCTGGAACTGGAAAGACTATGAGTGTCCTTGCTGTGATGAGGAATTTAAAGGCTGAAGTTGATGCAGGGAATATAAAACCCTACAGCTTTGTGGAAGTTAATGGTCTAAAGCTTGCTACACCTGAAAATATATACAGGGTGATATATGAATCCTTAACTGGGCATAGGGTTAGTTGGAAAAAGGCTCTCCAATTGTTGACTGAGCGATTTTCTGAAGGGAAGAAAGCTGGTAAAGAAGACGACCGGCCTTGTATTCTACTCATTGATGAGCTCGATCTTCTTTTGACAAGAAACCAGTCGGTTCTATACAACATTCTAGACTGGCCCACTAAACCACATGCCAAATTGATTGTGATAGGGATTGCAAACACCATGGATCTTCCAGAGAAGTTGTTTCCTCGGATTTCAAGCCGCATGGGTATCCATAGGGTATGTTTTGGCCCCTACAACTATCAGCAGCTTCAAGAGATTATCTCTAGCCGCCTCAAAGGAATTGATGCATTTGAAAAACAAGCCATCGAATTTGCCTCAAGGAAGGTAGCAGCTATTTCAGGAGATGCACGTCGTGTTCTGGAGATTTGTAGGCGTGCAGCTGAAATTACAGATTATCGTCTCAAGAAGCTGACCTCGTCTGCTGATACTGTTTCAAGAGCGCTTGTTGGCATGAGAGAGGTAGACGCGGCCATTCAAGAAATGTTCCAGGCACCTCATATTCAGGTTATGAAAAGTTGCTCAAGACTGAGTAAGATCTTCTTGACAGCTCTGGTTCATGAACTCTACAAAACAGGAATGGGTGAAACTACCTTCGAAAAGGTTGCTGTGGCCGTCTCTCGTCTCTGTGCAGGCAATGGAGAACCATTTCCTGGATACGACACCCTCTTGACAGTTGGGTGTAAGCTTGGTGAGTGCAGAATCATTATGTGCGAGTCAGGAGCCAAGCACAGGCTGCAAAAGCTACAGCTGAATTTTCCAAGTGATGACGTGTCCTTTGCACTCAAAGACTGCGAGAAGCTATCGTGGTTGGCTAAGTATCTGTGA 2625 44.04 MAETPKKSIRSPNKTKRLSPLNLKSTPSLTPATPQTLIPRRSPRWTSLRFDYAFPSKPIDQSEYQTRESVKPSRDVKRTPRRSISYAEEKSSGGLGNTPRNGKSREISSPQTKTEKYDESTKGTKSLKRKNGNESNEVSFYPKSPEQSETKKRKRSNGRTVVTRATASTNSITEKRKTSSQITSKRRVYYKKVVYDGGEFEVGDNVYVKRREDASSDNEDPEVEECRVCFRSGKAIMIECDDCLGGFHLKCLKPPLVEVPEGDWICRFCEARKMGKQIELPKPPKGKKRVRTMREKLLSGDLWAARIESLWKEDGTYWCRVQWYIIPEETAAGRQPHNLRRELYLTNDLADIETESILRQCQVMIPKEYAKANEGDDIFLCEYEYDIHWHSYKRLADIETEEEAGVEAESDDEWKLGKDADSDTDEDVEYEEEELTSLKARPSSTQELAANSRKGQFFGLQKIGTKKIPEHVRCHKKTELEKAKATLLLTSLPKSLPCRNKEMEEVTAFIKGAICDDECLGRCLYVHGVPGTGKTMSVLAVMRNLKAEVDAGNIKPYSFVEVNGLKLATPENIYRVIYESLTGHRVSWKKALQLLTERFSEGKKAGKEDDRPCILLIDELDLLLTRNQSVLYNILDWPTKPHAKLIVIGIANTMDLPEKLFPRISSRMGIHRVCFGPYNYQQLQEIISSRLKGIDAFEKQAIEFASRKVAAISGDARRVLEICRRAAEITDYRLKKLTSSADTVSRALVGMREVDAAIQEMFQAPHIQVMKSCSRLSKIFLTALVHELYKTGMGETTFEKVAVAVSRLCAGNGEPFPGYDTLLTVGCKLGECRIIMCESGAKHRLQKLQLNFPSDDVSFALKDCEKLSWLAKYL 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10537968 10542599 - Conep11aG0153800.1 Cone11ag1488 448740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag1488 874 MobiDBLite consensus disorder prediction 160 179 - -
Cone11ag1488 874 Pfam BAH domain 305 387 IPR001025 GO:0003682(InterPro)
Cone11ag1488 874 MobiDBLite consensus disorder prediction 14 42 - -
Cone11ag1488 874 Gene3D - 476 676 IPR027417 -
Cone11ag1488 874 FunFam Origin recognition complex subunit 1 289 479 - -
Cone11ag1488 874 Pfam AAA lid domain 697 731 IPR041083 -
Cone11ag1488 874 ProSiteProfiles Zinc finger PHD-type profile. 223 272 IPR019787 -
Cone11ag1488 874 ProSitePatterns Zinc finger PHD-type signature. 226 269 IPR019786 -
Cone11ag1488 874 Gene3D - 165 411 IPR043151 -
Cone11ag1488 874 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 490 732 IPR027417 -
Cone11ag1488 874 MobiDBLite consensus disorder prediction 109 132 - -
Cone11ag1488 874 FunFam Origin recognition complex subunit 1 673 763 - -
Cone11ag1488 874 FunFam Origin recognition complex subunit 1 477 676 - -
Cone11ag1488 874 FunFam Origin recognition complex subunit 1 221 288 - -
Cone11ag1488 874 MobiDBLite consensus disorder prediction 90 108 - -
Cone11ag1488 874 SMART PHD_3 225 270 IPR001965 -
Cone11ag1488 874 MobiDBLite consensus disorder prediction 402 429 - -
Cone11ag1488 874 Pfam PHD-finger 226 269 IPR019787 -
Cone11ag1488 874 SUPERFAMILY FYVE/PHD zinc finger 213 276 IPR011011 -
Cone11ag1488 874 SMART AAA_5 520 674 IPR003593 GO:0016887(InterPro)
Cone11ag1488 874 MobiDBLite consensus disorder prediction 1 179 - -
Cone11ag1488 874 SMART BAH_4 257 399 IPR001025 GO:0003682(InterPro)
Cone11ag1488 874 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 276 870 IPR050311 GO:0003688(PANTHER)|GO:0005664(PANTHER)|GO:0006270(PANTHER)|GO:0033314(PANTHER)
Cone11ag1488 874 Pfam CDC6, C terminal winged helix domain 769 860 IPR015163 -
Cone11ag1488 874 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 290 IPR013083 -
Cone11ag1488 874 ProSiteProfiles BAH domain profile. 282 396 IPR001025 GO:0003682(InterPro)
Cone11ag1488 874 Pfam ATPase family associated with various cellular activities (AAA) 525 670 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone11ag1488 874 MobiDBLite consensus disorder prediction 67 85 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1488 Cone-Chr11:10537968 Cone12ag0030 Cone-Chr12:223367 8.86E-06 dispersed
Cone11ag1488 Cone-Chr11:10537968 Cone1ag0580 Cone-Chr1:5826366 1.86E-21 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44397 None None None None Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag1488 K02603 - mdm:103456394 1185.63