Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone11ag1494 | ATGCAGTCAAAATCTGAAGCCACAAAGCGAGTAGAACCCAATCAACTCAACATCGTGCCAAGCAGTATTTACTGTGAACCTTGGTGGCGTAGCAGCATTGGTTATAATCCTTATCCCCCACCTGTACGTGGACGTGGAGGAAATGGGTCCAATTCAACTTCGTCTGAATGCCCAAATGTGGGTTCAGAGTCCAATGGAGGTCAATCTATGTCTAATGATAATGTGAACGTGGAAGATGGTGATTCAAATAAAGATTCGCCGACTAACAGATCCCCCAGCTCTAGAAATCATGGGCAAGATACCCAACAGCATGTTGCATCCACTGGGCAAGCAGCTATGCATGGGGAATGTATCACACAACCTCTACAGCTCGAACTTGTTGGTCACTCTATTGCTTGTGCATCAAATCCATACCAGGATCCGTATTATGGAGGAATGATGGCTGCTTATGGACATCACCTCATGTATCCTCCTATTCTTGGGATGCCTCATGCAAGAATGCCTTTGCCTCTTGAGATGGCACAAGAGCCTGTTTTTGTGAATGCCAAACAATACCAAGGGATTCTGAGACGAAGACAAGCACGTGCAAAAGCAGAGGTTGAGAAGAAGCTGATAAAAGTTAGAAAGCCATATCTTCATGAGTCCCGCCACCAGCATGCTATGAGAAGGGTGAGAGGCAATGGAGGACGTTTTGTCAAGAAAAACGAGAAAAAGGGGACCGAAGCAGGTTCCTCTGCCAAAGATAAGAGCAGAGAGTCTGGTCAGGCTCACTCATCACAGACTGCAAGCTCATCTGGTTCCGAGCCTTTGCCTGCTGATTCAGGTGACACTTGGAACTCTAACAGCCAGCAAGGAGTGAGTCAGTCTCGGGATTATGTGAAACGTGGTGGACCCTACCAGAATCACAGTGGTGTGCAGGGCTCAATGTATAATTCTTGTTCTGGTGAAAGAGGGGCGGAAGGAGACTCTTCGGCTCAGCAACATGGTAGAGTTTCTGCACACCATACTTCACAGAGACGGCTTGCCATCCAATGA | 1035 | 47.34 | MQSKSEATKRVEPNQLNIVPSSIYCEPWWRSSIGYNPYPPPVRGRGGNGSNSTSSECPNVGSESNGGQSMSNDNVNVEDGDSNKDSPTNRSPSSRNHGQDTQQHVASTGQAAMHGECITQPLQLELVGHSIACASNPYQDPYYGGMMAAYGHHLMYPPILGMPHARMPLPLEMAQEPVFVNAKQYQGILRRRQARAKAEVEKKLIKVRKPYLHESRHQHAMRRVRGNGGRFVKKNEKKGTEAGSSAKDKSRESGQAHSSQTASSSGSEPLPADSGDTWNSNSQQGVSQSRDYVKRGGPYQNHSGVQGSMYNSCSGERGAEGDSSAQQHGRVSAHHTSQRRLAIQ | 344 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 10560424 | 10563527 | + | Conep11aG0154400.1 | Cone11ag1494 | 448746 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone11ag1494 | 344 | MobiDBLite | consensus disorder prediction | 86 | 109 | - | - | |
Cone11ag1494 | 344 | Gene3D | - | 174 | 236 | - | - | |
Cone11ag1494 | 344 | ProSiteProfiles | NF-YA/HAP2 family profile. | 174 | 234 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone11ag1494 | 344 | MobiDBLite | consensus disorder prediction | 46 | 77 | - | - | |
Cone11ag1494 | 344 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 179 | 199 | IPR018362 | GO:0003677(InterPro)|GO:0016602(InterPro) | |
Cone11ag1494 | 344 | PRINTS | CCAAT-binding transcription factor subunit B signature | 208 | 231 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone11ag1494 | 344 | PRINTS | CCAAT-binding transcription factor subunit B signature | 177 | 199 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone11ag1494 | 344 | SMART | cbf3 | 173 | 234 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone11ag1494 | 344 | MobiDBLite | consensus disorder prediction | 255 | 290 | - | - | |
Cone11ag1494 | 344 | MobiDBLite | consensus disorder prediction | 35 | 111 | - | - | |
Cone11ag1494 | 344 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 21 | 290 | IPR001289 | GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Cone11ag1494 | 344 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 176 | 231 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone11ag1494 | 344 | MobiDBLite | consensus disorder prediction | 301 | 344 | - | - | |
Cone11ag1494 | 344 | MobiDBLite | consensus disorder prediction | 210 | 228 | - | - | |
Cone11ag1494 | 344 | MobiDBLite | consensus disorder prediction | 210 | 344 | - | - | |
Cone11ag1494 | 344 | MobiDBLite | consensus disorder prediction | 229 | 254 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone11ag1494 | Cone-Chr11:10560424 | Cone5ag1448 | Cone-Chr5:9392913 | 1.07E-90 | dispersed | |
Cone1ag0452 | Cone-Chr1:4115485 | Cone11ag1494 | Cone-Chr11:10560424 | 1.13E-44 | wgd | |
Cone11ag1494 | Cone-Chr11:10560424 | Cone18ag0101 | Cone-Chr18:528266 | 1.84E-204 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44398 | PF03018 | Dirigent | 9.60E-33 | CL0650 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone11ag1494 | K08064 | - | mdm:103407545 | 386.341 |