Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag1494 ATGCAGTCAAAATCTGAAGCCACAAAGCGAGTAGAACCCAATCAACTCAACATCGTGCCAAGCAGTATTTACTGTGAACCTTGGTGGCGTAGCAGCATTGGTTATAATCCTTATCCCCCACCTGTACGTGGACGTGGAGGAAATGGGTCCAATTCAACTTCGTCTGAATGCCCAAATGTGGGTTCAGAGTCCAATGGAGGTCAATCTATGTCTAATGATAATGTGAACGTGGAAGATGGTGATTCAAATAAAGATTCGCCGACTAACAGATCCCCCAGCTCTAGAAATCATGGGCAAGATACCCAACAGCATGTTGCATCCACTGGGCAAGCAGCTATGCATGGGGAATGTATCACACAACCTCTACAGCTCGAACTTGTTGGTCACTCTATTGCTTGTGCATCAAATCCATACCAGGATCCGTATTATGGAGGAATGATGGCTGCTTATGGACATCACCTCATGTATCCTCCTATTCTTGGGATGCCTCATGCAAGAATGCCTTTGCCTCTTGAGATGGCACAAGAGCCTGTTTTTGTGAATGCCAAACAATACCAAGGGATTCTGAGACGAAGACAAGCACGTGCAAAAGCAGAGGTTGAGAAGAAGCTGATAAAAGTTAGAAAGCCATATCTTCATGAGTCCCGCCACCAGCATGCTATGAGAAGGGTGAGAGGCAATGGAGGACGTTTTGTCAAGAAAAACGAGAAAAAGGGGACCGAAGCAGGTTCCTCTGCCAAAGATAAGAGCAGAGAGTCTGGTCAGGCTCACTCATCACAGACTGCAAGCTCATCTGGTTCCGAGCCTTTGCCTGCTGATTCAGGTGACACTTGGAACTCTAACAGCCAGCAAGGAGTGAGTCAGTCTCGGGATTATGTGAAACGTGGTGGACCCTACCAGAATCACAGTGGTGTGCAGGGCTCAATGTATAATTCTTGTTCTGGTGAAAGAGGGGCGGAAGGAGACTCTTCGGCTCAGCAACATGGTAGAGTTTCTGCACACCATACTTCACAGAGACGGCTTGCCATCCAATGA 1035 47.34 MQSKSEATKRVEPNQLNIVPSSIYCEPWWRSSIGYNPYPPPVRGRGGNGSNSTSSECPNVGSESNGGQSMSNDNVNVEDGDSNKDSPTNRSPSSRNHGQDTQQHVASTGQAAMHGECITQPLQLELVGHSIACASNPYQDPYYGGMMAAYGHHLMYPPILGMPHARMPLPLEMAQEPVFVNAKQYQGILRRRQARAKAEVEKKLIKVRKPYLHESRHQHAMRRVRGNGGRFVKKNEKKGTEAGSSAKDKSRESGQAHSSQTASSSGSEPLPADSGDTWNSNSQQGVSQSRDYVKRGGPYQNHSGVQGSMYNSCSGERGAEGDSSAQQHGRVSAHHTSQRRLAIQ 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10560424 10563527 + Conep11aG0154400.1 Cone11ag1494 448746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag1494 344 MobiDBLite consensus disorder prediction 86 109 - -
Cone11ag1494 344 Gene3D - 174 236 - -
Cone11ag1494 344 ProSiteProfiles NF-YA/HAP2 family profile. 174 234 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag1494 344 MobiDBLite consensus disorder prediction 46 77 - -
Cone11ag1494 344 ProSitePatterns NF-YA/HAP2 subunit signature. 179 199 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Cone11ag1494 344 PRINTS CCAAT-binding transcription factor subunit B signature 208 231 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag1494 344 PRINTS CCAAT-binding transcription factor subunit B signature 177 199 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag1494 344 SMART cbf3 173 234 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag1494 344 MobiDBLite consensus disorder prediction 255 290 - -
Cone11ag1494 344 MobiDBLite consensus disorder prediction 35 111 - -
Cone11ag1494 344 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 21 290 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cone11ag1494 344 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 231 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone11ag1494 344 MobiDBLite consensus disorder prediction 301 344 - -
Cone11ag1494 344 MobiDBLite consensus disorder prediction 210 228 - -
Cone11ag1494 344 MobiDBLite consensus disorder prediction 210 344 - -
Cone11ag1494 344 MobiDBLite consensus disorder prediction 229 254 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1494 Cone-Chr11:10560424 Cone5ag1448 Cone-Chr5:9392913 1.07E-90 dispersed
Cone1ag0452 Cone-Chr1:4115485 Cone11ag1494 Cone-Chr11:10560424 1.13E-44 wgd
Cone11ag1494 Cone-Chr11:10560424 Cone18ag0101 Cone-Chr18:528266 1.84E-204 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44398 PF03018 Dirigent 9.60E-33 CL0650 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag1494 K08064 - mdm:103407545 386.341