Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag1515 ATGTTTCAAGACGAAGGCTCTTCCTCTGTTACTTCCTCCCCACTAGAATTCTTCTCCATGATGACCATTTCTCCCACTCTAGGCTCGCCCCATCCATGGCGGAGAGAGCTCCGATCAGAAGACAGAGGTCTCTACCTCATCAAATTCTTACTCGCTTGCACAACTCACATTTCAGCAAATAACCTGGAAAATGCAAACTTCTTTCTAGAAGAAATCTCCCACCTCGCCTCTACAGACGGGGACACGATGCAGAGGATCGCTGCATACTTTGCCGAGGCACTTGCGGACCGGATCCTCAAAGCCTGGCCGGGTATACACAAGGCCTTAAACTCGACCAGAATCTCTCTCATCTCGGAAGAGATTTATATCCGGAAACTGTTTTTCGAGATATTCCCTTTCCTTAAGGTGGCTTATGTGCTCACTAATCAATCTATTATAGAGGCCATGGAAGGGGAGAATCATATTCATATAATTGATCTTAATGCGACAGAGCCGGCTCAATGGATCACCCTTCTAGAAGCTTTTAGTACTCGCCCGGAAGGTTCACCCAATTTGAGAATCACAGGAGTTCATAGAAACAAAGAGGTGTTGGACCAAATTGGTCATATTTTAACCAAGAAGGCTGAGCAGTTAGATTTTGCCTTTCAGTTCAAATCAGTTGTTACCAAATTGGAGAATCTTGATATCGAGAAGCTCGGTGTGAAATCCGGGGAAGCTCTAGCTATCAGCTCTGTTCTCCAATTACATACCCTTTTGGCTTGTGAAGATGAATCATCACTACTTCTACGAAAAAGGTCAAAGGGTTCATGTCCAAATGGCCTTGCAGTAAATTTCCAAATGGGACTTAACCAAAGAACATTGGGGGATTTTCTAAGCCCTAGTCCGGACTCCGCCACATCAGCATCACCTCCTTCTGGAAAGATCGATAGCTTTCTTAATGCCTTGTGGGGTTTATCTCCTAAGGTGATGGTAATAACGGAGCAAGATTCAAATCATAATGGATCGAGTCTAATGGACAGATTATCAGAAGCTCTCTTCTTCTATGCGGCCATGTTTGACGGGTTGGAGTCTACTATGTCTAGGACTTCAGTGGAGAGATTGAAGGTGGAGAAGATGTTGTTAGGGGAGGAGATCAAGAACATTATTGCTTGTGAAGGAGGTGAGAGGAAAGAGAGACATGAGAAATTTGATAAGTGGATTAAACGACTTGATTCAGCCGGGTTTGGAAATGTTGGGTTGAGTTATTATGGGATGTTACAAGCAAATAGGTTGTTACAAGGTTATGGTTGTGATGGGTATAGGATTAGGGAAGATAATGGCGGGATTCTTCTATGTTGGCAAGAACGGCCGTTGTTTTCAGTTTCGGCTTGGAGATGTAGGAAGTTAGGGTAA 1392 43.97 MFQDEGSSSVTSSPLEFFSMMTISPTLGSPHPWRRELRSEDRGLYLIKFLLACTTHISANNLENANFFLEEISHLASTDGDTMQRIAAYFAEALADRILKAWPGIHKALNSTRISLISEEIYIRKLFFEIFPFLKVAYVLTNQSIIEAMEGENHIHIIDLNATEPAQWITLLEAFSTRPEGSPNLRITGVHRNKEVLDQIGHILTKKAEQLDFAFQFKSVVTKLENLDIEKLGVKSGEALAISSVLQLHTLLACEDESSLLLRKRSKGSCPNGLAVNFQMGLNQRTLGDFLSPSPDSATSASPPSGKIDSFLNALWGLSPKVMVITEQDSNHNGSSLMDRLSEALFFYAAMFDGLESTMSRTSVERLKVEKMLLGEEIKNIIACEGGERKERHEKFDKWIKRLDSAGFGNVGLSYYGMLQANRLLQGYGCDGYRIREDNGGILLCWQERPLFSVSAWRCRKLG 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10668604 10670681 - Conep11aG0156500.1 Cone11ag1515 448767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag1515 463 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 33 457 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone11ag1515 463 Pfam GRAS domain family 47 458 IPR005202 -
Cone11ag1515 463 ProSiteProfiles GRAS family profile. 37 458 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1515 Cone-Chr11:10668604 Cone1ag1484 Cone-Chr1:57078917 2.69E-189 dispersed
Cone11ag1515 Cone-Chr11:10668604 Cone18ag0079 Cone-Chr18:421427 1.93e-316 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44400 PF00098 zf-CCHC 3.80E-05 CL0511 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag1515 - - - 0.0