Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag1551 ATGATGATGTACGAGGAGATGGGATTTTGTGGTGATCTGGATTTCTTATCTGTCCCATCAGGGGAAGGTGATATGGGGGCTCTTCAAACTGAACCCGAAGCCACAGTGGAGGATGATTATTCTGATGAAGAGATTGATGTTGATGAGCTCGAGAGAAGGATGTGGAGGGACAAAATGCGTCTCAAACGGCTAAAAGAGCAGAACAAGGGCAAGGAAGGGATTGAAATAGCAAAGCAGAGGCAGTCCCAGGAACAAGCAAGGAGGAAGAAGATGTCAAGGGCGCAAGATGGAATCTTAAAGTACATGTTAAAGATGATGGAAGTTTGTAAAGCTCAAGGTTTTGTTTACGGCATCATTCCAGAGAAAGGAAAGCCTGTAACTGGTGCATCTGATAATCTTCGTGAATGGTGGAAAGATAAGGTCAGGTTTGACCGAAACGGCCCAGCTGCCATAGCCAAGTACCAAGTGGATAATGCGATCCCGGGTAAAAACGATGGCTGTAATTCGATAGGTCCGACCCCACATACCTTGCAAGAACTTCAAGATACCACCCTTGGTTCACTTTTGTCAGCTCTAATGCAGCATTGTGATCCTCCTCAGAGGAGGTTTCCATTGGAGAAAGGCGTTCCTCCACCATGGTGGCCCTCTGGAAATGAGGACTGGTGGCCCCAACTGGGTTTGCCAAATGATCAAGGTCCTCCACCTTACAAGAAACCGCACGACCTAAAGAAAGCATGGAAAGTAGGTGTTCTTACTGCAGTTATCAAACACATGTCCCCTGATATTTCCAAGATCCGCAAGCTTGTAAGGCAGTCCAAGTGTTTGCAGGATAAAATGACGGCCAAGGAAAGTGCCACCTGGCTTGCCGTTATCAACCAAGAGGAGGCCTTAGCCCAAGAGCTTTACCCCGACTGTTGCCCCCCTTTGTCATCAGGTGGAGGTAGTGGTTCCTTGGTAATTAATGATTGCAGCGAATATGATGTAGAAGGAGCTGAAGAAGAGCCAAACTTTGATGTACAAGAATGCAAACCAGAGAATCTTAGTCCTTTCAATTTGGGGATGGACAGAATGAGAGAAAGGGTACAGGTTCGACAGCCATCTTTCCCAATGAAGGGTGAAGCCGTTGCAAACTTGGACTTTACGAGGAAGAGAAAGCCATCCAGTGATCTAAACATGATGATGGATCAAAAGATCTATACCTGTGAGTTTGTTCAGTGTCCTTATAGTGAACTCCGTCTTGGCTTCCATGATAGAACTTCAAGGGACAATCATCAATTGACTTGCCCATGTGGGACTTCTTCGGATTTCGGAAGCTCAAATTTTCAGTTTAACGAGGTTAAACCTGTTATCTTCCCTCAATCCTTCGTCCAAACCAAGCCAGCAGCTGCAGCCCAATCTGTTAACTCTGTCCCACCACCACCACCACCTACCTTTGACTTATCTGGATTAGGAGTTCCAGAAGATGGACAGAAGCTAATCAGTGAGCTCATGTCCATTTACGAGACTAATCGGGGAAACAAGAACATAAATCCTGGCAACAGTTCAGTCACTTCAGGGAATCAAAATCTTTCTCACCCGAAAATTCGACACCAACAAGAGGAATACTTTCGTGGTCAAAGTGTGATGGTGGAGGGAAATATCTTTGAAGAGAGCAATGTTTCTACTAACCATCAATCATTTTCAAGGGAGGAAGTTCAATTTGACAGGTTTAAGCCTCTGAATTCTCCTTTCGAGACAAACCCCAGCAACAATAATTTCCATATGATGTTTGGGTCTCCATTTGATCTCTCGTCGTTCCATTACAAAGAGGAAGTACAAGGAGTGGCAATTGAAACACTGTCAAAGCTACAGGATATTCCAATCTGGTACCAGTAA 1875 45.01 MMMYEEMGFCGDLDFLSVPSGEGDMGALQTEPEATVEDDYSDEEIDVDELERRMWRDKMRLKRLKEQNKGKEGIEIAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQVDNAIPGKNDGCNSIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPSGNEDWWPQLGLPNDQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDISKIRKLVRQSKCLQDKMTAKESATWLAVINQEEALAQELYPDCCPPLSSGGGSGSLVINDCSEYDVEGAEEEPNFDVQECKPENLSPFNLGMDRMRERVQVRQPSFPMKGEAVANLDFTRKRKPSSDLNMMMDQKIYTCEFVQCPYSELRLGFHDRTSRDNHQLTCPCGTSSDFGSSNFQFNEVKPVIFPQSFVQTKPAAAAQSVNSVPPPPPPTFDLSGLGVPEDGQKLISELMSIYETNRGNKNINPGNSSVTSGNQNLSHPKIRHQQEEYFRGQSVMVEGNIFEESNVSTNHQSFSREEVQFDRFKPLNSPFETNPSNNNFHMMFGSPFDLSSFHYKEEVQGVAIETLSKLQDIPIWYQ 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10818602 10821950 - Conep11aG0160200.1 Cone11ag1551 448803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag1551 624 FunFam Ethylene insensitive 3-like 1 168 305 - -
Cone11ag1551 624 SUPERFAMILY DNA-binding domain of EIN3-like 174 298 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cone11ag1551 624 Gene3D - 80 157 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cone11ag1551 624 MobiDBLite consensus disorder prediction 67 91 - -
Cone11ag1551 624 Coils Coil 33 67 - -
Cone11ag1551 624 MobiDBLite consensus disorder prediction 22 41 - -
Cone11ag1551 624 FunFam Ethylene insensitive 3-like 1 80 158 - -
Cone11ag1551 624 Gene3D - 172 305 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cone11ag1551 624 Pfam Ethylene insensitive 3, DNA-binding domain 48 295 IPR047091 GO:0003700(InterPro)
Cone11ag1551 624 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 2 606 IPR006957 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1551 Cone-Chr11:10818602 Cone5ag0446 Cone-Chr5:1893514 2.95E-231 dispersed
Cone11ag1551 Cone-Chr11:10818602 Cone18ag0042 Cone-Chr18:261362 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44401 PF05008 V-SNARE 9.30E-23 CL0147 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag1551 K14514 - csv:101206055 988.023