Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag1551 ATGATGATGTACGAGGAGATGGGATTTTGTGGTGATCTGGATTTCTTATCTGTCCCATCAGGGGAAGGTGATATGGGGGCTCTTCAAACTGAACCCGAAGCCACAGTGGAGGATGATTATTCTGATGAAGAGATTGATGTTGATGAGCTCGAGAGAAGGATGTGGAGGGACAAAATGCGTCTCAAACGGCTAAAAGAGCAGAACAAGGGCAAGGAAGGGATTGAAATAGCAAAGCAGAGGCAGTCCCAGGAACAAGCAAGGAGGAAGAAGATGTCAAGGGCGCAAGATGGAATCTTAAAGTACATGTTAAAGATGATGGAAGTTTGTAAAGCTCAAGGTTTTGTTTACGGCATCATTCCAGAGAAAGGAAAGCCTGTAACTGGTGCATCTGATAATCTTCGTGAATGGTGGAAAGATAAGGTCAGGTTTGACCGAAACGGCCCAGCTGCCATAGCCAAGTACCAAGTGGATAATGCGATCCCGGGTAAAAACGATGGCTGTAATTCGATAGGTCCGACCCCACATACCTTGCAAGAACTTCAAGATACCACCCTTGGTTCACTTTTGTCAGCTCTAATGCAGCATTGTGATCCTCCTCAGAGGAGGTTTCCATTGGAGAAAGGCGTTCCTCCACCATGGTGGCCCTCTGGAAATGAGGACTGGTGGCCCCAACTGGGTTTGCCAAATGATCAAGGTCCTCCACCTTACAAGAAACCGCACGACCTAAAGAAAGCATGGAAAGTAGGTGTTCTTACTGCAGTTATCAAACACATGTCCCCTGATATTTCCAAGATCCGCAAGCTTGTAAGGCAGTCCAAGTGTTTGCAGGATAAAATGACGGCCAAGGAAAGTGCCACCTGGCTTGCCGTTATCAACCAAGAGGAGGCCTTAGCCCAAGAGCTTTACCCCGACTGTTGCCCCCCTTTGTCATCAGGTGGAGGTAGTGGTTCCTTGGTAATTAATGATTGCAGCGAATATGATGTAGAAGGAGCTGAAGAAGAGCCAAACTTTGATGTACAAGAATGCAAACCAGAGAATCTTAGTCCTTTCAATTTGGGGATGGACAGAATGAGAGAAAGGGTACAGGTTCGACAGCCATCTTTCCCAATGAAGGGTGAAGCCGTTGCAAACTTGGACTTTACGAGGAAGAGAAAGCCATCCAGTGATCTAAACATGATGATGGATCAAAAGATCTATACCTGTGAGTTTGTTCAGTGTCCTTATAGTGAACTCCGTCTTGGCTTCCATGATAGAACTTCAAGGGACAATCATCAATTGACTTGCCCATGTGGGACTTCTTCGGATTTCGGAAGCTCAAATTTTCAGTTTAACGAGGTTAAACCTGTTATCTTCCCTCAATCCTTCGTCCAAACCAAGCCAGCAGCTGCAGCCCAATCTGTTAACTCTGTCCCACCACCACCACCACCTACCTTTGACTTATCTGGATTAGGAGTTCCAGAAGATGGACAGAAGCTAATCAGTGAGCTCATGTCCATTTACGAGACTAATCGGGGAAACAAGAACATAAATCCTGGCAACAGTTCAGTCACTTCAGGGAATCAAAATCTTTCTCACCCGAAAATTCGACACCAACAAGAGGAATACTTTCGTGGTCAAAGTGTGATGGTGGAGGGAAATATCTTTGAAGAGAGCAATGTTTCTACTAACCATCAATCATTTTCAAGGGAGGAAGTTCAATTTGACAGGTTTAAGCCTCTGAATTCTCCTTTCGAGACAAACCCCAGCAACAATAATTTCCATATGATGTTTGGGTCTCCATTTGATCTCTCGTCGTTCCATTACAAAGAGGAAGTACAAGGAGTGGCAATTGAAACACTGTCAAAGCTACAGGATATTCCAATCTGGTACCAGTAA 1875 45.01 MMMYEEMGFCGDLDFLSVPSGEGDMGALQTEPEATVEDDYSDEEIDVDELERRMWRDKMRLKRLKEQNKGKEGIEIAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQVDNAIPGKNDGCNSIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPSGNEDWWPQLGLPNDQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDISKIRKLVRQSKCLQDKMTAKESATWLAVINQEEALAQELYPDCCPPLSSGGGSGSLVINDCSEYDVEGAEEEPNFDVQECKPENLSPFNLGMDRMRERVQVRQPSFPMKGEAVANLDFTRKRKPSSDLNMMMDQKIYTCEFVQCPYSELRLGFHDRTSRDNHQLTCPCGTSSDFGSSNFQFNEVKPVIFPQSFVQTKPAAAAQSVNSVPPPPPPTFDLSGLGVPEDGQKLISELMSIYETNRGNKNINPGNSSVTSGNQNLSHPKIRHQQEEYFRGQSVMVEGNIFEESNVSTNHQSFSREEVQFDRFKPLNSPFETNPSNNNFHMMFGSPFDLSSFHYKEEVQGVAIETLSKLQDIPIWYQ 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10818602 10821950 - Conep11aG0160200.1 Cone11ag1551 448803

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag1551 624 FunFam Ethylene insensitive 3-like 1 168 305 - -
Cone11ag1551 624 SUPERFAMILY DNA-binding domain of EIN3-like 174 298 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cone11ag1551 624 Gene3D - 80 157 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cone11ag1551 624 MobiDBLite consensus disorder prediction 67 91 - -
Cone11ag1551 624 Coils Coil 33 67 - -
Cone11ag1551 624 MobiDBLite consensus disorder prediction 22 41 - -
Cone11ag1551 624 FunFam Ethylene insensitive 3-like 1 80 158 - -
Cone11ag1551 624 Gene3D - 172 305 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cone11ag1551 624 Pfam Ethylene insensitive 3, DNA-binding domain 48 295 IPR047091 GO:0003700(InterPro)
Cone11ag1551 624 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 2 606 IPR006957 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag1551 K14514 - - csv:101206055 988.023
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1551 Cone-Chr11:10818602 Cone5ag0446 Cone-Chr5:1893514 2.95E-231 dispersed
Cone11ag1551 Cone-Chr11:10818602 Cone18ag0042 Cone-Chr18:261362 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone11ag1551 . 1 623 EIL Transcription Factor Family AT2G27050 58.2 4.7e-190 661.8
Cone18ag0042 . 5 599 EIL Transcription Factor Family AT2G27050 59.9 1.1e-189 660.6
Cone5ag0446 . 7 512 EIL Transcription Factor Family AT2G27050 59.2 4.9e-155 545.4
Cone1ag1457 . 7 505 EIL Transcription Factor Family AT2G27050 58.2 6.2e-150 528.5
Cone11ag0985 . 5 490 EIL Transcription Factor Family AT2G27050 55.1 1.5e-135 480.7
Cone18ag0594 . 5 490 EIL Transcription Factor Family AT2G27050 54.9 5.7e-135 478.8
Cone11ag1473 . 75 330 EIL Transcription Factor Family AT2G27050 66.0 1.3e-91 334.7
Cone18ag0117 . 76 330 EIL Transcription Factor Family AT2G27050 64.5 3.3e-90 330.1
Cone18ag0117 . 79 327 EIL Transcription Factor Family AT5G21120 50.4 6.1e-72 269.2
Cone11ag1473 . 79 327 EIL Transcription Factor Family AT5G21120 51.2 1.0e-71 268.5
Cone11ag1473 . 74 551 EIL Transcription Factor Family AT1G73730 56.0 1.0e-133 474.6
Cone18ag0117 . 78 559 EIL Transcription Factor Family AT1G73730 56.0 2.8e-131 466.5
Cone18ag0042 . 13 309 EIL Transcription Factor Family AT1G73730 64.2 1.3e-107 387.9
Cone11ag1551 . 37 333 EIL Transcription Factor Family AT1G73730 63.3 2.4e-106 383.6
Cone1ag1457 . 39 329 EIL Transcription Factor Family AT1G73730 62.8 7.1e-103 372.1
Cone5ag0446 . 41 332 EIL Transcription Factor Family AT1G73730 61.5 1.6e-102 370.9
Cone11ag0985 . 47 348 EIL Transcription Factor Family AT1G73730 60.5 1.2e-94 344.7
Cone18ag0594 . 47 315 EIL Transcription Factor Family AT1G73730 63.9 3.7e-91 333.2
Cone11ag1551 . 2 623 EIL Transcription Factor Family AT3G20770 60.1 2.5e-205 712.6
Cone18ag0042 . 5 599 EIL Transcription Factor Family AT3G20770 61.8 1.4e-203 706.8
Cone5ag0446 . 6 512 EIL Transcription Factor Family AT3G20770 59.2 9.7e-157 551.2
Cone1ag1457 . 6 536 EIL Transcription Factor Family AT3G20770 55.7 1.2e-154 544.3
Cone11ag0985 . 7 520 EIL Transcription Factor Family AT3G20770 51.1 2.4e-131 466.8
Cone18ag0594 . 7 525 EIL Transcription Factor Family AT3G20770 51.5 1.2e-130 464.5
Cone11ag1473 . 75 330 EIL Transcription Factor Family AT3G20770 67.3 5.2e-94 342.8
Cone18ag0117 . 76 330 EIL Transcription Factor Family AT3G20770 66.8 2.9e-92 337.0
Cone18ag0117 . 84 299 EIL Transcription Factor Family AT5G65100 58.8 5.5e-71 266.2
Cone11ag1473 . 84 299 EIL Transcription Factor Family AT5G65100 58.8 7.2e-71 265.8
Cone5ag0446 . 33 297 EIL Transcription Factor Family AT5G10120 58.5 7.4e-85 312.0
Cone1ag1457 . 33 297 EIL Transcription Factor Family AT5G10120 57.8 1.6e-84 310.8
Cone11ag1551 . 31 297 EIL Transcription Factor Family AT5G10120 56.7 1.1e-83 308.1
Cone11ag1473 . 78 291 EIL Transcription Factor Family AT5G10120 59.8 1.9e-72 270.8
Cone18ag0117 . 78 289 EIL Transcription Factor Family AT5G10120 59.4 2.1e-71 267.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44401 PF05008 V-SNARE 9.30E-23 CL0147 Cone TF