Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone11ag1560 ATGAGTCAAACCAAAGCCAAGCGTCGAGTGGGAAAGTATGAAGTTGGAAGGACAATAGGTGAGGGAACATTTGCTAAAGTGAAATTTGGTAGAAATACTGAGACAGGGGAACCTGTTGCACTCAAAATCCTAGACAAAGAGAAGGTTCTCAAACACAAGATGGCTGAACAGATCAAGCGGGAAATAGAAACAATGAAGCTTATAAAGCATCCAAATGTTGTTCGGTTACACGAGGTTATGGCTAGCAAGACAAAGATATTCATTGTTTTGGAATTTGTTACTGGTGGGGAGCTCTTTGACAAAATTGTAAACCATGGGCGTATGAAAGAAGATGAGACAAGGAGGTATTTTCAGCAACTTATAAATGCTGTTGATTATTGTCATAGTAGGGGTGTGTACCACAGGGACCTCAAGCCAGAAAATCTACTCTTGGATGCTTACGGAAACCTGAAAGTATCTGATTTTGGGTTAAGTGCGCTGTCCCAGCAAGTCAGGGATGATGGCTTGCTTCACACTACTTGTGGAACTCCAAACTATGTTGCTCCTGAGGTCCTTAATGATAGAGGCTATGATGGGGCAACTGCAGACTTGTGGTCTTGTGGAGTTATTCTCTTTGTACTGCTTGCAGGTTACTTGCCTTTTGACGACACTAATCTTATGAACCTGTATAAAAAAATATCGGCTGCCGAATTTACTTGCCCTCCTTGGCTCTCTCTTGGTGCAATGAAATTGATAACTAGAATCCTTGATCCCAATCCTATGACTCGTGTCACTGTACCTGAAATTCTGGATGACGAATGGTTTAAGAAAGACTACAAGCCCCCTGTGTTTGATGAGAAGATAGATACAAACCTGGATGATGTTGAAGCCGTTTTTAAGGATTCAGAAGAGCACCATGTGACAGAGAGGAAGGAAGAACAGCCGACTGCAATGAATGCCTTTGAGTTAATTTCGATGTCTAAAGGACTAAACCTGGAAAATTTGTTTGATGTGGAACAGGAATTTAAGAGAGAAACAAGGTTTACGTCCAAATGCCCGGCCAACGAGATCATATATAAGATTGAGAAGGCTGCAAAACCTTTAGGTTTTGATGTACATAAGAAAAACTACAAGTTGAGGCTTGAAAATTTGAAAGCTGGACGAAAGGGAAACCTTAATGTTGCCACAGAGATATTTCAAGTCGCCCCTTCTCTTCATATGGTTGAGGTACGAAAAGCAAAAGGAGACACTTTGGAGTTCCTCAAGTTCTACAAAAACCTCTCCACGTCCCTGGAGGATGTTGTGTGGAAGACCGAAGAGGACATGCAAGAAGCTAAGCAAGGACATTGA 1329 41.76 MSQTKAKRRVGKYEVGRTIGEGTFAKVKFGRNTETGEPVALKILDKEKVLKHKMAEQIKREIETMKLIKHPNVVRLHEVMASKTKIFIVLEFVTGGELFDKIVNHGRMKEDETRRYFQQLINAVDYCHSRGVYHRDLKPENLLLDAYGNLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLLAGYLPFDDTNLMNLYKKISAAEFTCPPWLSLGAMKLITRILDPNPMTRVTVPEILDDEWFKKDYKPPVFDEKIDTNLDDVEAVFKDSEEHHVTERKEEQPTAMNAFELISMSKGLNLENLFDVEQEFKRETRFTSKCPANEIIYKIEKAAKPLGFDVHKKNYKLRLENLKAGRKGNLNVATEIFQVAPSLHMVEVRKAKGDTLEFLKFYKNLSTSLEDVVWKTEEDMQEAKQGH 442
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 10850903 10856620 - Conep11aG0161100.1 Cone11ag1560 448812
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone11ag1560 442 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165(InterPro)
Cone11ag1560 442 FunFam Non-specific serine/threonine protein kinase 4 92 - -
Cone11ag1560 442 ProSiteProfiles Protein kinase domain profile. 13 268 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag1560 442 Gene3D Kinase associated domain 1, KA1 305 430 - -
Cone11ag1560 442 FunFam Non-specific serine/threonine protein kinase 6 309 - -
Cone11ag1560 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone11ag1560 442 CDD CIPK_C 312 426 - -
Cone11ag1560 442 Pfam NAF domain 308 367 IPR004041 GO:0007165(InterPro)
Cone11ag1560 442 FunFam Non-specific serine/threonine protein kinase 305 430 - -
Cone11ag1560 442 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 418 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone11ag1560 442 Gene3D Phosphorylase Kinase; domain 1 3 92 - -
Cone11ag1560 442 CDD STKc_SnRK3 12 267 - -
Cone11ag1560 442 Gene3D Transferase(Phosphotransferase) domain 1 93 275 - -
Cone11ag1560 442 SUPERFAMILY Protein kinase-like (PK-like) 9 300 IPR011009 -
Cone11ag1560 442 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524(InterPro)
Cone11ag1560 442 Pfam Protein kinase domain 13 268 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone11ag1560 442 SMART serkin_6 13 268 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0170 Cone-Chr11:839816 Cone11ag1560 Cone-Chr11:10850903 1.08E-146 dispersed
Cone11ag1560 Cone-Chr11:10850903 Cone5ag1426 Cone-Chr5:9014618 7.24E-244 dispersed
Cone11ag1560 Cone-Chr11:10850903 Cone6ag1118 Cone-Chr6:7140717 2.22E-221 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81925 PF00171 Aldedh 1.70E-05 CL0099 Cone PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone11ag1560 - - - 0.0