Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0020 ATGGCAACATCAAACGCCTATAATGTTTTGTCATGCAACTATGCTGTTGCAGGTGCCGGGCCCTCATCGGAGCTTAACTCAAAGCTCGTTCCAGTCTCTCCGGCACTGATCCCTGCTTCTCGGAAATCGTGGGCAATCAGGGCTCAGCAACAAGCTAAAGTTTCTGAAGCACAAGAATCAAAGGGAAGCGAAGGAAGAAGGGGTGCACTTGTTTTCCTAGCAGCCAGCTTTTTCGCTGCTACTTCTGCCTCCTCGTCCTCTGCAAATGCTGGCATCATTGAAGAATACCTCGAAAAGAGCAAAACCAACAAGGATTTGAATGACAAGAAAAGGTTGGCAACAAGTGGAGCAAATTTTGCAAGAGCATACACTGTTCAGTTTGGCACTTGCAAATTCCCTGAGAACTTCACTGGCTGCCAAGATCTTGCCAAGACAAAGAAAGTGCCATTCATCAGTGATGATTTGCAGCTGGAGTGTGAGGGTAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGA 528 46.78 MATSNAYNVLSCNYAVAGAGPSSELNSKLVPVSPALIPASRKSWAIRAQQQAKVSEAQESKGSEGRRGALVFLAASFFAATSASSSSANAGIIEEYLEKSKTNKDLNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKTKKVPFISDDLQLECEGKDKYKCGSNVFWKW 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 174101 175445 - Conep12aG0002000.1 Cone12ag0020 448864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0020 175 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC 1 175 IPR008796 GO:0009522(InterPro)|GO:0015979(InterPro)|GO:0030093(PANTHER)
Cone12ag0020 175 FunFam Photosystem I reaction center subunit N 91 175 - -
Cone12ag0020 175 Pfam Photosystem I reaction centre subunit N (PSAN or PSI-N) 45 175 IPR008796 GO:0009522(InterPro)|GO:0015979(InterPro)
Cone12ag0020 175 Gene3D - 91 175 IPR044907 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0020 Cone-Chr12:174101 Cone6ag1277 Cone-Chr6:10198074 1.35E-75 wgd
Cone12ag0020 Cone-Chr12:174101 Cone8ag0016 Cone-Chr8:135147 2.57E-106 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0020 K02701 - cit:102611607 225.713