Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0023 ATGCCTGCTTGGTGGGGGAAAAAGTCGAGTAAGAACAAAGATCAAAGCCCACGAAGTAGCTCCACCAGCTTATCAAAATCAGCGCCCCTCTTCAACAAGCTCGGAGATAAGAAGAAATCGAGTAACGATGAAAAGCCCAAGAGTTTTGACGAGGTCTCCGCCGTGATTTTCTCCAGAAGCTCACCACGGTCGAGCAAGGATTATACTTCTCCACGAGCTGGAGCTGGCGGCTCTTCTGGGTTTTCTGGTTTCGATTCAGATTCGGGCGAGAGGACGTGTCATCCTCTTCCTCGCCCACAGTGCTTTACTATTGATCATCATGCGGTTGGGATTGGATCTGGGTCGGGTTCGGTTTCTAGTGTCAGCTCAACTGGGTCGTCCGATGATCATCCGATCTCTCAGGATCATGGCCAATTAAATGCTCACAAGGGTCTTGGTGATTCCAAAATAGACCTGAGGTCGAGAAGCCCAGGCCCAGGGTCTAGGGGGCCCACAAGCCCGACATCACCTCTCCACCCACGGTTTTGTGGATTGAATCTGATTGAGTCTCCAGCGGGAAAGATAGACGATGCAAAGAGTCAATGTCATAGGCTACCACTTCCACCAGGTTCTCCTACAAGCCCTTCTGCCTTGGCCAGCTCAAGAACTAATGGTGTGACAGAAAACTCAACAACTTCCACACAACCAAAATGGAAGAAAGGAAGGCTACTTGGAAGGGGCACATTCGGGCATGTTTACCTTGGTTTTAACAGTGTTAATGGGCAAATGTGTGCAATCAAAGAAGTCAGGCTTGTAAGTGATGACCGGACATCTAAAGAATGTCTCAAGCAACTGAATCAGGAGATAAATTTGCTCAGTCAGCTTTCACATCCTAACATTGTTAGATATTATGGAAGCGAGATGGTTGATGAGGCGCTGTCGGTCTATTTAGAATATGTGTCAGGTGGTTCAATCCACAAATTACTTCAAGAGTATGGCCCTTTTAAAGAACCTGTTATCCAGAACTACACACGGCAGATTATTTCTGGGCTTGCTTATCTTCATGGACGGAATACTGTGCACAGGGATATCAAGGGAGCCAACATATTGGTAGATCCTCACGGCGAGATCAAGCTGGCAGACTTTGGGATGGCTAAACATATAACAAATTGCTGTTCGATGCTTTCTTTCAAAGGAAGTCCTTATTGGATGGCACCCGAGGTTGTAATGAATACAAATGGCTATAGTCTTGCTGTTGATATATGGAGCTTGGGTTGTACAATCCTTGAAATGGCAACATCAAAACCACCTTGGAGCAAATATGAAGGGGTGGCTGCCATATTCAAAATCGGGAACAGCAAAGATATTCCCGAAATTCCCAATCATCTTTCTAGCGATGCAAAGAGTTTTATCAAACTATGTTTGCAACGGGACCCATCAGCTCGTCCAACAGCCTCACAATTGCTAGACCACCCTTTTATTCGAGACCAAATGACTCCTACTAATAAAGCTGCTAGTGTCAATGTGACTACCATGGATGCCTTTATCTTCAATTGTGAAGGAATTCGGACCACGCCAATGTTGGATCATCATCCCACCAGGAAAAGTATAAGCTCGTGTGATAATAGAGATTTTGAGTTGAACCCAGTACTAAGGACTTCAAGAGCAATGCGGGGCCTGAGTGAGAATGCAAGAATGATCACATCTCTACCTGTATCTCCATGTTCAAGTCCATTAAGACAATACAAAAGCACTTATCTCTCGCCCCCACACCCATCTTTTCCGACAATGGCGCAAAGCAATTACAATGTAAACTACTCATCACATGCGGTTAGACAATTTGCCACTCTCGATCCTTGGCAAGAATCGTCTCTTTTCAGAGTCCAGACTCCTGGTGGGTCCCCACGAACAAGACTAATTTGA 1902 45.69 MPAWWGKKSSKNKDQSPRSSSTSLSKSAPLFNKLGDKKKSSNDEKPKSFDEVSAVIFSRSSPRSSKDYTSPRAGAGGSSGFSGFDSDSGERTCHPLPRPQCFTIDHHAVGIGSGSGSVSSVSSTGSSDDHPISQDHGQLNAHKGLGDSKIDLRSRSPGPGSRGPTSPTSPLHPRFCGLNLIESPAGKIDDAKSQCHRLPLPPGSPTSPSALASSRTNGVTENSTTSTQPKWKKGRLLGRGTFGHVYLGFNSVNGQMCAIKEVRLVSDDRTSKECLKQLNQEINLLSQLSHPNIVRYYGSEMVDEALSVYLEYVSGGSIHKLLQEYGPFKEPVIQNYTRQIISGLAYLHGRNTVHRDIKGANILVDPHGEIKLADFGMAKHITNCCSMLSFKGSPYWMAPEVVMNTNGYSLAVDIWSLGCTILEMATSKPPWSKYEGVAAIFKIGNSKDIPEIPNHLSSDAKSFIKLCLQRDPSARPTASQLLDHPFIRDQMTPTNKAASVNVTTMDAFIFNCEGIRTTPMLDHHPTRKSISSCDNRDFELNPVLRTSRAMRGLSENARMITSLPVSPCSSPLRQYKSTYLSPPHPSFPTMAQSNYNVNYSSHAVRQFATLDPWQESSLFRVQTPGGSPRTRLI 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 182913 186802 - Conep12aG0002300.1 Cone12ag0023 448867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0023 633 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 29 493 IPR050538 -
Cone12ag0023 633 MobiDBLite consensus disorder prediction 113 134 - -
Cone12ag0023 633 SMART serkin_6 231 487 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0023 633 MobiDBLite consensus disorder prediction 207 230 - -
Cone12ag0023 633 MobiDBLite consensus disorder prediction 15 29 - -
Cone12ag0023 633 ProSiteProfiles Protein kinase domain profile. 231 487 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0023 633 SUPERFAMILY Protein kinase-like (PK-like) 230 488 IPR011009 -
Cone12ag0023 633 Pfam Protein kinase domain 232 487 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0023 633 MobiDBLite consensus disorder prediction 32 50 - -
Cone12ag0023 633 ProSitePatterns Protein kinases ATP-binding region signature. 237 260 IPR017441 GO:0005524(InterPro)
Cone12ag0023 633 MobiDBLite consensus disorder prediction 1 98 - -
Cone12ag0023 633 MobiDBLite consensus disorder prediction 192 230 - -
Cone12ag0023 633 FunFam Mitogen-activated protein kinase kinase kinase 229 511 - -
Cone12ag0023 633 CDD STKc_MEKK1_plant 230 487 - -
Cone12ag0023 633 Gene3D Transferase(Phosphotransferase) domain 1 227 510 - -
Cone12ag0023 633 MobiDBLite consensus disorder prediction 113 176 - -
Cone12ag0023 633 MobiDBLite consensus disorder prediction 54 86 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0023 Cone-Chr12:182913 Cone1ag1174 Cone-Chr1:55782217 4.89E-139 dispersed
Cone12ag0023 Cone-Chr12:182913 Cone4ag1555 Cone-Chr4:11959759 1.46E-93 wgd
Cone12ag0023 Cone-Chr12:182913 Cone6ag1281 Cone-Chr6:10240385 2.96E-239 wgd
Cone12ag0023 Cone-Chr12:182913 Cone7ag1397 Cone-Chr7:10015837 7.09E-94 wgd
Cone12ag0023 Cone-Chr12:182913 Cone8ag0019 Cone-Chr8:140232 0 wgd
Cone12ag0023 Cone-Chr12:182913 Cone9ag1239 Cone-Chr9:9076150 8.27E-235 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81927 PF01061 ABC2_membrane 5.70E-44 CL0181 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0023 K04421 - cit:102607672 791.186