Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone12ag0027 | ATGAACATTAACAACACTTGGCCGGATCTTGACCCAATTGCCTCCGGCATCGATGAAGATCAGCTTCATGATCATAATCTCTTACTAATTCCCTCTCCCGAACTTCTCTTTGATTCTCTTTGGCCTAACAGCTGCAATAATACCCCTCTAATTCAACCCCATCATGATATACCTTCCTCATCTTCAAGCTATGTTCCAACTTTATTCCCTTTTGGACATCAATCAGAAATCAACCATGGTGGGGTGGGGATGAATGAGGATCAAGATAAGGAAGAAGATAATTCAGAAGAAGAAGAGCTTGGCCCCGTAAAGGAAATGATGTACAAGATTGCCGCGATGCAGCCAGTAGATATCGATCCCTCTACGCTCAGAAAACCAAAGCGAAGGAACGTATGGATAAGCGACGACCCCCAGAGCGTGGCGGCCCGTCTCAGGAGAGAGAGAATAAGCGAGAAAATCCGTATTCTCCAGAGACTTGTTCCCGGAGGAACAAAAATGGACACGGCTTCCATGTTAGATGAAGCAGTTCGTTATGTGAAGTTTCTGAAGCGACACATCCGTCTCTTACAATCGAATCATCGGCAGCACTGTAATAATTTTGATATCACCTCCGTCATACCAAACTGGCCGTTTATTGCACCTCAACAAGTGAACGGCTCAGTCGACGTTAGAGCCTCCACCTCTAATGAACCGTCTACCGCCCATTTGGATGCAAAAATCTTGGGCTTTAACTAA | 735 | 45.31 | MNINNTWPDLDPIASGIDEDQLHDHNLLLIPSPELLFDSLWPNSCNNTPLIQPHHDIPSSSSSYVPTLFPFGHQSEINHGGVGMNEDQDKEEDNSEEEELGPVKEMMYKIAAMQPVDIDPSTLRKPKRRNVWISDDPQSVAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAVRYVKFLKRHIRLLQSNHRQHCNNFDITSVIPNWPFIAPQQVNGSVDVRASTSNEPSTAHLDAKILGFN | 244 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 214122 | 214856 | - | Conep12aG0002700.1 | Cone12ag0027 | 448871 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone12ag0027 | 244 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 133 | 182 | IPR011598 | GO:0046983(InterPro) | |
| Cone12ag0027 | 244 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 139 | 195 | IPR036638 | GO:0046983(InterPro) | |
| Cone12ag0027 | 244 | FunFam | BHLH transcription factor | 136 | 199 | - | - | |
| Cone12ag0027 | 244 | Gene3D | - | 137 | 202 | IPR036638 | GO:0046983(InterPro) | |
| Cone12ag0027 | 244 | SMART | finulus | 139 | 188 | IPR011598 | GO:0046983(InterPro) | |
| Cone12ag0027 | 244 | CDD | bHLH_AtIND_like | 134 | 192 | - | - | |
| Cone12ag0027 | 244 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 52 | 228 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cone12ag0027 | 244 | Pfam | Helix-loop-helix DNA-binding domain | 142 | 183 | IPR011598 | GO:0046983(InterPro) | |
| Cone12ag0027 | 244 | MobiDBLite | consensus disorder prediction | 80 | 99 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone12ag0027 | Cone-Chr12:214122 | Cone12ag0123 | Cone-Chr12:659774 | 6.93E-37 | dispersed | |
| Cone12ag0027 | Cone-Chr12:214122 | Cone8ag0029 | Cone-Chr8:191897 | 3.89E-133 | wgd | |
| Cone12ag0027 | Cone-Chr12:214122 | Cone9ag1243 | Cone-Chr9:9107450 | 3.01E-46 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 44405 | PF00005 | ABC_tran | 1.60E-06 | CL0023 | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone12ag0027 | - | - | - | 0.0 |