Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0028 ATGGCCGCCTCCCTCTTCTTCCTTTCCTTCCTCCTCTTCCTCTCCTCCTTCTCCGCCGACCTCCATATTGTCTCCGCCATTCACAAACCCAAACCCAAACACTATACCAAACCACCCTCCCCTAAAGTTAAAACTCACGATCAACCTGCTCCCATTTCCCGCCCCGAGATCCAGAACGCCTGTAAAGCAACCCGTTTTCCCGGTCCATGCGAAAACTCCCTGGCCCAACACAACCGCGTCCCTCCCAACCCCTCAACCCTCCAGATCATCCAATCCGCCGTCGGAGTCTCCACCGACAATCTCAACACCGCCAAATCCATGATCAACGATATCCTAGGCTCGTCCGCGGGGAATCTGAACCGCTCCAACACCGCCAAGGTCTGCCTCGAGGTCCTGCACAATTCCGAGTACCGAATCTCCGGAGCTAATGATTCTCTGGCACGTGGAAGGAACAAGGATGCCCGGGCATTTATGAGCGCCGCGCTGGTGTTCCAGTACGACTGCTGGTCCGGCCTCAAGTACGTGAACGACACGCAGCTGATCAACCAGACGATGTCGTTTCTCGACTCCCTGCTCTCGCTTTCCAGCAACGCGCTCAGCATGATGTTCGCGTACGACACCGTGGGGAACGATACGGCGTCGTGGGGCCCACCGAAAACGGAGCGCAACGGGTTCTGGGAGGTTTCCGGGTCGGTCGGAACAGGTTCCGGGTTGGGATTCGACGGCGGGTTCCCGTCCAAGATGAAGGCGGACGTTACGGTTTGCAAAGATGGGAGTGACGGCTGTTACAAGTCGGTGCAGGAAGCCGTTAATGCTGCGCCAGATAACGGCTGGGCGCGAAGGTTCGTGATTTACATAAAGGAGGGTGTTTACGAGGAGACCGTTCGCGTGCCGTTACAGAAGTGGAACGTGGTATTTTTGGGAGAAGGCATGGGCAAAACCGTCATTACAGGGTCGAGAAATGTGGGCCAGCCTGGTATGACTACCTACGAAACAGCTACTGTTGGAGTTCTTGGCGATGGATTCATGGCAAGTGGTCTCACATTCCAAAACACGGCAGGACCTGATGCTCACCAAGCGGTTGCCTTCAGATCAGACAGTGATCTATCAGTTATCGAAAACTGTGAATTCTTAGGCAATCAAGATACTGTTTACGCTCACACTCTTCGACAGTTCTACAAATCATGTAGAATTGAAGGCAATGTCGATTTCATTTTCGGAAATGCAGCTTCAATATTTCAGGACTGCCAGATATTGGTCCGTCCACGTCAGCTCAAGCCTGAACATGGAGAAAACAATGCCATCACGGCTCATGGTAGAACCGACCCAGCCCAATCAACTGGCTTCGTGTTCCAGAACTGCTTGATAAATGGGACCGAGGAGTACATGGCTTTGTACCGTAGCAAACCTCAAGTGCATAAAAACTATCTAGGGAGGCCATGGAAGGAATATTCCCGGACGGTTTTTGTAAATAGTAAACTTGAAGAGTTTATTACTCCGCAAGGATGGCTGCCTTGGAGCGGGGATTTCGCATTGAAGACTCTGTTCTACGGGGAACATGGAAATACAGGCCTCGGGTCGGACCGGCGCAAGAGGGTTAGTTGGAGCACCCTTATTCCGGACAACCATGTAATGAGTTACTCAGTCCAGAATTTCATTCAAGGAGACGAATGGATTCCTTCATCTAGAGATGTTGCTAGAGATGTTGTTAGAAGGGGGGCAAGAGAGAACAATAAGAAGATGCAGAAAGGGATCTATTAG 1761 51.85 MAASLFFLSFLLFLSSFSADLHIVSAIHKPKPKHYTKPPSPKVKTHDQPAPISRPEIQNACKATRFPGPCENSLAQHNRVPPNPSTLQIIQSAVGVSTDNLNTAKSMINDILGSSAGNLNRSNTAKVCLEVLHNSEYRISGANDSLARGRNKDARAFMSAALVFQYDCWSGLKYVNDTQLINQTMSFLDSLLSLSSNALSMMFAYDTVGNDTASWGPPKTERNGFWEVSGSVGTGSGLGFDGGFPSKMKADVTVCKDGSDGCYKSVQEAVNAAPDNGWARRFVIYIKEGVYEETVRVPLQKWNVVFLGEGMGKTVITGSRNVGQPGMTTYETATVGVLGDGFMASGLTFQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTVYAHTLRQFYKSCRIEGNVDFIFGNAASIFQDCQILVRPRQLKPEHGENNAITAHGRTDPAQSTGFVFQNCLINGTEEYMALYRSKPQVHKNYLGRPWKEYSRTVFVNSKLEEFITPQGWLPWSGDFALKTLFYGEHGNTGLGSDRRKRVSWSTLIPDNHVMSYSVQNFIQGDEWIPSSRDVARDVVRRGARENNKKMQKGIY 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 217607 220329 + Conep12aG0002800.1 Cone12ag0028 448872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0028 586 Pfam Plant invertase/pectin methylesterase inhibitor 57 201 IPR006501 GO:0004857(InterPro)
Cone12ag0028 586 CDD PMEI-like_3 60 179 - -
Cone12ag0028 586 SMART PMEI_2 52 201 IPR006501 GO:0004857(InterPro)
Cone12ag0028 586 PANTHER PECTINESTERASE 18 561 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cone12ag0028 586 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 204 IPR035513 -
Cone12ag0028 586 MobiDBLite consensus disorder prediction 30 51 - -
Cone12ag0028 586 SUPERFAMILY Pectin lyase-like 248 562 IPR011050 -
Cone12ag0028 586 FunFam Probable pectinesterase/pectinesterase inhibitor 51 55 204 - -
Cone12ag0028 586 Pfam Pectinesterase 251 556 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone12ag0028 586 FunFam Pectinesterase 245 568 - -
Cone12ag0028 586 NCBIfam pectinesterase inhibitor domain 52 201 IPR006501 GO:0004857(InterPro)
Cone12ag0028 586 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 202 IPR035513 -
Cone12ag0028 586 Gene3D - 245 566 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0028 Cone-Chr12:217607 Cone4ag0895 Cone-Chr4:6721999 1.26E-103 dispersed
Cone12ag0028 Cone-Chr12:217607 Cone8ag0030 Cone-Chr8:195245 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0028 - - - 0.0