Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0043 ATGGCCGATGCAGAGGATATTCAGCCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGGCTGGATTTGCCGGCGATGATGCTCCCAGAGCTGTTTTCCCCAGTATTGTTGGTAGACCACGACACACTGGTGTGATGGTTGGAATGGGCCAGAAAGATGCTTATGTTGGTGATGAAGCCCAGTCTAAAAGAGGTATTCTTACCTTGAAGTATCCCATTGAGCACGGTATTGTCAGCAACTGGGATGATATGGAAAAGATCTGGCATCACACTTTCTACAACGAGCTCCGTGTTGCTCCTGAAGAACACCCAGTGCTTCTCACTGAAGCTCCTCTCAATCCAAAGGCCAACAGAGAAAAGATGACTCAGATTATGTTCGAAACATTCAATGTCCCAGCTATGTATGTGGCCATCCAGGCTGTCTTGTCTCTCTATGCCAGTGGTCGTACAACTGGTATCGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTTCCAATCTACGAGGGTTATGCTCTCCCCCACGCCATCCTTCGGCTCGACCTTGCTGGTCGTGATCTTACTGATGCTTTGATGAAGATCCTCACAGAGAGAGGGTACATGTTCACCACCACAGCCGAGCGGGAAATTGTCCGTGACATGAAGGAGAAGCTTGCATATGTTGCTCTTGACTATGAGCAAGAGCTTGAGACCGCTAAGAGCAGCTCCTCTGTTGAGAAGAACTATGAACTGCCCGACGGGCAAGTCATCACAATCGGAGCTGAGAGATTCCGTTGCCCAGAGGTCCTCTTCCAGCCATCTCTCATCGGAATGGAAGCTGCTGGAATCCATGAGACTACCTATAACTCCATCATGAAGTGTGACGTGGATATCAGAAAGGACTTGTATGGAAACATTGTTCTCAGTGGTGGTTCAACTATGTTCCCTGGTATTGCAGATAGGATGAGCAAAGAGATCACAGCCCTTGCTCCTAGCAGCATGAAGATCAAGGTTGTGGCACCACCTGAAAGGAAATACAGTGTCTGGATCGGAGGGTCGATCCTTGCATCCCTTAGCACCTTCCAGCAGATGTGGATTTCAAAGGGCGAGTATGATGAGTCCGGTCCATCCATTGTTCACAGGAAGTGCTTCTGA 1134 48.94 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 262455 265344 + Conep12aG0004300.1 Cone12ag0043 448887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0043 377 Pfam Actin 5 377 IPR004000 -
Cone12ag0043 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cone12ag0043 377 SMART actin_3 7 377 IPR004000 -
Cone12ag0043 377 FunFam Actin, alpha skeletal muscle 3 179 - -
Cone12ag0043 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cone12ag0043 377 Gene3D - 140 340 - -
Cone12ag0043 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cone12ag0043 377 FunFam Major actin 261 340 - -
Cone12ag0043 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cone12ag0043 377 PANTHER ACTIN 8 369 IPR004000 -
Cone12ag0043 377 FunFam Putative actin-related protein 5 341 369 - -
Cone12ag0043 377 FunFam Actin, muscle 182 273 - -
Cone12ag0043 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cone12ag0043 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cone12ag0043 377 Gene3D - 10 371 - -
Cone12ag0043 377 FunFam Actin, alpha skeletal muscle 36 73 - -
Cone12ag0043 377 PRINTS Actin signature 238 254 IPR004000 -
Cone12ag0043 377 PRINTS Actin signature 51 62 IPR004000 -
Cone12ag0043 377 PRINTS Actin signature 63 85 IPR004000 -
Cone12ag0043 377 PRINTS Actin signature 142 161 IPR004000 -
Cone12ag0043 377 PRINTS Actin signature 28 37 IPR004000 -
Cone12ag0043 377 PRINTS Actin signature 117 130 IPR004000 -
Cone12ag0043 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0043 Cone-Chr12:262455 Cone8ag0048 Cone-Chr8:258605 1.29E-277 dispersed
Cone5ag1153 Cone-Chr5:5193356 Cone12ag0043 Cone-Chr12:262455 1.04E-71 transposed
Cone12ag0933 Cone-Chr12:8147612 Cone12ag0043 Cone-Chr12:262455 3.37E-34 transposed
Cone18ag1443 Cone-Chr18:9708772 Cone12ag0043 Cone-Chr12:262455 1.13E-118 transposed
Cone12ag0043 Cone-Chr12:262455 Cone6ag1317 Cone-Chr6:10591365 1.06E-228 wgd
Cone12ag0043 Cone-Chr12:262455 Cone8ag0044 Cone-Chr8:248787 1.29E-277 wgd
Cone12ag0043 Cone-Chr12:262455 Cone9ag1250 Cone-Chr9:9202192 1.57E-278 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0043 K10355 - rcu:8264754 758.059