Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone12ag0052 | ATGGCAAAGTCAGCAGAGCAAGAGCACCCACAAAAAGCTTTTGGTTGGGCAGCTAGAGATCCTTCTGGTTCTCTATCCCCCTTCCACTTCTCAAGAAGGGAAAATGGTGATGAAGATGTTACAGTGAAAGTTCTTTACTGTGGAGTTTGCCATTCTGACCTTCATACTGCCAAGAATGAATGGGGTTTCACAAATTACCCTGTTGTTCCCGGGCATGAAATTGTTGGTGTAGTAACCAAGCTTGGGAAAAACGTGAAGAAATTCAAAGAAGGCGACCGGGTTGGAGTTGGAGTCATAATCGGATCATGCAAAAGCTGTGAGCAATGCAACCAAGACTCAGAAAATTACTGCTCCAAACTGATTTTCACCTACAACTCATATTCATACAACGGGACTAAAAATTACGGTGGTTACTCTGATATGATGGTCGTTGATCAACACTTTGTTCTCCGTTTTCCCGAAAATTTACCCCCTGATGCCGGTGCTCCGCTTCTATGTGCCGGAATTACTGTTTATAGCCCAATGAAATATTATGGAATGACCGAGCCGGGTAAGCATCTGGGCATAGCCGGGCTAGGAGGGCTTGGCCATGTTGCTGTGAAGATAGGAAAGGCGTTCGGGTTGAAAGTTACAGTTATTAGTTCTTCACTGAAAAAGAAGGAGGAGGCGATTAAGAGACTTGGGGCGGATTCTTTCCTTTTTTCTAGTGACCCGGTTACAATGAAGGCTGCAATGGGTAGTATGGATTTCATAATTGATACGGTTTCTGCTATTCATCCCCTTGCTCCTCTGCTTAGTCTTTTGAAGATTAATGGGAAGCTTGTCACTTTGGGTTTGCCTGAGAAGCCTTTAGAGTTACCTATCTTTCCTCTAGTACTGGGGAGAAAGATGATAGGGGGAAGTGATATAGGGGGAATGAAAGAGACACAAGAGATGCTAGACTTTTGTGGAAAGCACAATATTGCAGCAGATATCGAGCTCATTCGTATGGAAAACATTAACAAAGCCATGGAAAGGCTTGCCAAATCCGATGTTCGTTATCGGTTTGTGATAGATGTTGGGAACTCATTGTCAAAGTAA | 1080 | 43.61 | MAKSAEQEHPQKAFGWAARDPSGSLSPFHFSRRENGDEDVTVKVLYCGVCHSDLHTAKNEWGFTNYPVVPGHEIVGVVTKLGKNVKKFKEGDRVGVGVIIGSCKSCEQCNQDSENYCSKLIFTYNSYSYNGTKNYGGYSDMMVVDQHFVLRFPENLPPDAGAPLLCAGITVYSPMKYYGMTEPGKHLGIAGLGGLGHVAVKIGKAFGLKVTVISSSLKKKEEAIKRLGADSFLFSSDPVTMKAAMGSMDFIIDTVSAIHPLAPLLSLLKINGKLVTLGLPEKPLELPIFPLVLGRKMIGGSDIGGMKETQEMLDFCGKHNIAADIELIRMENINKAMERLAKSDVRYRFVIDVGNSLSK | 359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 301583 | 304301 | + | Conep12aG0005200.1 | Cone12ag0052 | 448896 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone12ag0052 | 359 | PANTHER | ALDEHYDE REDUCTASE | 5 | 356 | IPR047109 | GO:0009809(PANTHER)|GO:0016616(InterPro)|GO:0016616(PANTHER)|GO:0045551(PANTHER) | |
| Cone12ag0052 | 359 | Gene3D | - | 167 | 323 | - | - | |
| Cone12ag0052 | 359 | ProSitePatterns | Zinc-containing alcohol dehydrogenases signature. | 71 | 85 | IPR002328 | GO:0008270(InterPro)|GO:0016491(InterPro) | |
| Cone12ag0052 | 359 | Gene3D | - | 16 | 353 | - | - | |
| Cone12ag0052 | 359 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Cone12ag0052 | 359 | FunFam | probable cinnamyl alcohol dehydrogenase | 16 | 175 | - | - | |
| Cone12ag0052 | 359 | SUPERFAMILY | GroES-like | 19 | 185 | IPR011032 | - | |
| Cone12ag0052 | 359 | FunFam | Cinnamyl alcohol dehydrogenase | 167 | 323 | - | - | |
| Cone12ag0052 | 359 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 156 | 321 | IPR036291 | - | |
| Cone12ag0052 | 359 | CDD | CAD1 | 14 | 352 | IPR047109 | GO:0016616(InterPro) | |
| Cone12ag0052 | 359 | Pfam | Zinc-binding dehydrogenase | 194 | 316 | IPR013149 | - | |
| Cone12ag0052 | 359 | SMART | PKS_ER_names_mod | 23 | 351 | IPR020843 | GO:0016491(InterPro) | |
| Cone12ag0052 | 359 | Pfam | Alcohol dehydrogenase GroES-like domain | 36 | 153 | IPR013154 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone12ag0052 | Cone-Chr12:301583 | Cone12ag0206 | Cone-Chr12:1048994 | 2.76E-185 | dispersed | |
| Cone12ag0052 | Cone-Chr12:301583 | Cone8ag0057 | Cone-Chr8:295123 | 4.18E-258 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone12ag0052 | K00083 | - | rcu:8267993 | 598.971 |