Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0082 ATGGCAAGTGGATTTGGGGAATCAACAACAAACATTCCTGCTTTTCAAAACCCATCTTGTTCGACCAGTAGTAACAATGATGCTGGCGATTTTGAATGCAATATCTGCCTCGACCTAGCTCAAGACCCAATCGTCACTCTCTGTGGGCACCTCTTTTGCTGGCCTTGTCTGTATAAATGGCTCCATCACCACTCGCATTCTCAAGAATGCCCTGTTTGCAAAGCCCTAGTTGAAGAGGAAAAGCTAGTTCCTCTCTATGGAAGAGGGAAAAACCAGACCGATCCTAGATCGAAGTCTTATCCGGGAATGGAAATTCCCCGAAGGCCTGCAGGCCAAAGGCCTGAAACCGTTCCTCCAACAGCTTCAAACCAATTTGCCAATTACGGGTTTGGGTTTATGGGCGGATTTGTTCCAACAGCATCTGCAAGGATTGGGAACTTCAGTTTGGCCTTTGGTGGTCTGATCCCTTCTTTGTTTAATATTCACTTTCATGGGTTTTCGGATGCTACTGTTTATGGGACAACTTCCGGTTTTCCTTATGCATTTAATACCTTTCATGGCGGCCATGCTCATGGCTTTCCTCAACCAGTTAGTCGAGGAGAGCAGGCGGATAACGTTTTGAAGAATCTTCTCTTGCTGATTGGGGTGTTTGTGATCCTTGCTCTTCTCTGTTGGTAA 678 46.02 MASGFGESTTNIPAFQNPSCSTSSNNDAGDFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHHHSHSQECPVCKALVEEEKLVPLYGRGKNQTDPRSKSYPGMEIPRRPAGQRPETVPPTASNQFANYGFGFMGGFVPTASARIGNFSLAFGGLIPSLFNIHFHGFSDATVYGTTSGFPYAFNTFHGGHAHGFPQPVSRGEQADNVLKNLLLLIGVFVILALLCW 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 434239 435737 + Conep12aG0008400.1 Cone12ag0082 448926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0082 225 SMART ring_2 33 73 IPR001841 -
Cone12ag0082 225 SUPERFAMILY RING/U-box 29 86 - -
Cone12ag0082 225 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Cone12ag0082 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 95 IPR013083 -
Cone12ag0082 225 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 17 87 - -
Cone12ag0082 225 Pfam Zinc finger, C3HC4 type (RING finger) 32 73 - -
Cone12ag0082 225 MobiDBLite consensus disorder prediction 87 117 - -
Cone12ag0082 225 ProSiteProfiles Zinc finger RING-type profile. 33 74 IPR001841 -
Cone12ag0082 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 10 217 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER)
Cone12ag0082 225 CDD RING-HC_AtRMA-like 31 75 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0082 Cone-Chr12:434239 Cone4ag1888 Cone-Chr4:13476940 6.74E-98 dispersed
Cone12ag0082 Cone-Chr12:434239 Cone8ag0084 Cone-Chr8:438507 1.30E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0082 K10666 - cit:102626834 380.563