Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0085 ATGGGAATAGCAACACCGCCACCATCACTGCCGCCACCATCATCGTTTTTCTCCAACTCAAAGGATCATCATCAATACAACAACAGAAACTACTTCTCCTCCAATTCGATTCAGGTTTCAGTACCCGATAAGTTGGAATATTTTTCTCCAAATTCTATGTCCCATCAAGATCACCAGCATCACCACTATCATCATCACAACATCTACAACAACAACTTCTCAAACAATAATGGCGGTTTCGAGAGATCCTCGTCGTCACCAACCGAACATCAGCACCACCACCACATAGCACAACAGATCCGGAGGGAGAAGTTGAGAGTACAAGGATATAACGAGCCACCACCTCCACCGCCACCACTGGCGGGGCTAGACGAGGAGCCAGGCGGGCTCCAATTATATGAAACCGGAGGGATGTTATCCGAAATGTTCAATTTCAATCCTGGGGGTAATCCTGGAACTGAATTATTAGAACCGCCGTTAACGGCATCCAGACTGGCAGGTTTTCGGCCAAGACCAGCAACTACCGGGCCTAATGAGTGGTACGGAATTTCTAGACCTAATCAACATCAACATCAGCAACAGATCTCAGGAATTAATGCTGATTCGGCAGCTGCCATGCAACTGTTTCTAATGAACCCGCAACCAAGATCGCCACCGCCATCTCCACCACCGCAACAACATGCTCTAAATTCAAGTAATTCCTCTAGTACCCTCCATATGCTCCTTCCAAATCCATCTACTAATAATTCTCTTCAAGGAGGGGCTTTTGGTCAATTCGCTGCTTGGGAAGGAGGAGGTGGTAATAACCCTAATGATCATCATCAAATCGGAGGGCTTTCATTGTCACTATCATCTTCATTGCAGCAACTGGAGGCAGCAAAAGCTGAAGAACTAAGAATTGGGGATGGAGAATTGTTGTACTACAATGGAGGTTCTTCTTCACATCACCATCAAAATCAAGTTCATGTGGGGTTCGGGGGGCCCACGTCGGCATCTCTAGGAGTGGTCAATGTGCTAAGGAATTCAAAGTATGTGAAAGCAGCTCAAGAATTGTTGGAAGAATTCTGTAGCGTCGGGAGGGATGAAATCAAGAAGAACAAGTTACTTGCTCGAAACAATTCAAACCCTAGCTCCAATACTAACAATCTCGCCGCCACCACAACCACCAGCTCCACTACAGTGGCTGGTGGCTCCTCCGGTACTTCTTCAAAGAATACTTACCCACCCTTGTCAGCGGCTGATAGGATTGAGCACCAGCGGAGGAAGGTCAAACTCTTATCAATGCTTGATGAGGTGGACCGAAGATTCAACCTCTATTGTGAGCAGATGCAGATGGTAGTGAACTCGTTCGACATAGTGATGGGTTTTGAATCGGCAGTGCCGTACACAGCGCTAGCTCAAAAGGCAATGTCGAGGCACTTTAGGTGCCTAAAGGATGCTATCTTAGCCCAATTGAAACACAGTTGCGAGCTGCTGGGCGAGAAAGATGCATCGGGAACAAGTGGCCTAACGAAAGGAGAGACCCCTAGGCTTAAGTTGCTTGAACAAAGTTTGAGGCAGCAACGAGCGTTTAATCAGATGGGGCTGATGGAACAAGAAGCTTGGAGGCCGCAGAGGGGTTTGCCTGAACGCTCTGTCAATATCTTGAGAGCTTGGCTCTTTGAGCATTTCCTTCACCCGTATCCAAGCGATGCAGATAAGCATCTGTTGGCTAGACAGACTGGTTTATCGAGAAATCAGGTTTCAAACTGGTTCATCAATGCGAGGGTTAGATTGTGGAAACCCATGGTAGAAGAAATGTACCAACAAGAAGCCAAAGAGGAGAAACCAATGGAAGAAGAGGAAAGAGATTGTCATGATGATCATGAATTAATAGATCATAATCATCATCAGCATGCCTTTGCACAAACTTCGATGTTACCGGTCACGTCAGCAACTGCAACCACTCAACCACCGTCAGCACCACCTCCAACCGCTGTCGCAACAACCACCATGAGATCAATATCAAACATGAACGCAGGATCATTGCTTGAAAGCGACTCGTCACTCATTGCAATGATCAATAGATCACAAGCCGTCTCGGAAAACCAAGCAAAGCAGCAGCAACAACCACCGCAATCATCACCCACCGGCACCTCCACCTCCACCACTGCCAATGAGGCGGCGCCACAAGGCCACATCATGTCTCAGTGTTTCTCCCCCCACCCTCGTGATCATCATCTGTCAGCTGACGCTCTTCAGCACGACACGTGTAGACGTGGCAGCATACTTTCAGCTGATTATAACAATCATATTGGGACCACCACCATCACCACCACTACAACCTCAGCTGGAAATAATCATGCTCATGACAGCATGGGGCCTACGCTCATAAGGTTCGGGACCACCACGTCCGGTGACGTGTCACTCACATTAGGATTACGCCATGCTGGAAACATGCCGGAGAAAAGTTCTACTTTCTCAGTTAGAGACCTGGGAGGCTGTTAA 2487 47.69 MGIATPPPSLPPPSSFFSNSKDHHQYNNRNYFSSNSIQVSVPDKLEYFSPNSMSHQDHQHHHYHHHNIYNNNFSNNNGGFERSSSSPTEHQHHHHIAQQIRREKLRVQGYNEPPPPPPPLAGLDEEPGGLQLYETGGMLSEMFNFNPGGNPGTELLEPPLTASRLAGFRPRPATTGPNEWYGISRPNQHQHQQQISGINADSAAAMQLFLMNPQPRSPPPSPPPQQHALNSSNSSSTLHMLLPNPSTNNSLQGGAFGQFAAWEGGGGNNPNDHHQIGGLSLSLSSSLQQLEAAKAEELRIGDGELLYYNGGSSSHHHQNQVHVGFGGPTSASLGVVNVLRNSKYVKAAQELLEEFCSVGRDEIKKNKLLARNNSNPSSNTNNLAATTTTSSTTVAGGSSGTSSKNTYPPLSAADRIEHQRRKVKLLSMLDEVDRRFNLYCEQMQMVVNSFDIVMGFESAVPYTALAQKAMSRHFRCLKDAILAQLKHSCELLGEKDASGTSGLTKGETPRLKLLEQSLRQQRAFNQMGLMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQEAKEEKPMEEEERDCHDDHELIDHNHHQHAFAQTSMLPVTSATATTQPPSAPPPTAVATTTMRSISNMNAGSLLESDSSLIAMINRSQAVSENQAKQQQQPPQSSPTGTSTSTTANEAAPQGHIMSQCFSPHPRDHHLSADALQHDTCRRGSILSADYNNHIGTTTITTTTTSAGNNHAHDSMGPTLIRFGTTTSGDVSLTLGLRHAGNMPEKSSTFSVRDLGGC 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 466788 474130 + Conep12aG0008700.1 Cone12ag0085 448929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0085 828 MobiDBLite consensus disorder prediction 72 101 - -
Cone12ag0085 828 ProSiteProfiles 'Homeobox' domain profile. 532 595 IPR001356 GO:0003677(InterPro)
Cone12ag0085 828 MobiDBLite consensus disorder prediction 211 249 - -
Cone12ag0085 828 Pfam Homeobox KN domain 552 591 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone12ag0085 828 Gene3D - 538 600 - -
Cone12ag0085 828 CDD homeodomain 535 596 IPR001356 GO:0003677(InterPro)
Cone12ag0085 828 MobiDBLite consensus disorder prediction 692 722 - -
Cone12ag0085 828 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 255 613 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone12ag0085 828 SMART HOX_1 535 599 IPR001356 GO:0003677(InterPro)
Cone12ag0085 828 FunFam BEL1-like homeodomain protein 4 538 600 - -
Cone12ag0085 828 MobiDBLite consensus disorder prediction 227 249 - -
Cone12ag0085 828 MobiDBLite consensus disorder prediction 1 22 - -
Cone12ag0085 828 Pfam Associated with HOX 338 481 IPR006563 -
Cone12ag0085 828 SUPERFAMILY Homeodomain-like 537 602 IPR009057 -
Cone12ag0085 828 MobiDBLite consensus disorder prediction 86 101 - -
Cone12ag0085 828 MobiDBLite consensus disorder prediction 369 409 - -
Cone12ag0085 828 SMART prehox3 333 483 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0085 Cone-Chr12:466788 Cone8ag0284 Cone-Chr8:1635714 1.69E-82 dispersed
Cone12ag0085 Cone-Chr12:466788 Cone8ag0088 Cone-Chr8:468633 0 wgd
Cone12ag0085 Cone-Chr12:466788 Cone9ag1286 Cone-Chr9:9611690 9.47E-125 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44411 PF04194 PDCD2_C 3.30E-08 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0085 - - - 0.0