Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0123 ATGGATGTTGACATGATTAACATGATGATTCAGATGGAAACATTCCCTGATGATCATGATCAAGTGCTACTGCAAAACCTCTACGATGAATTCCCTAGTGGCGGCCCTACCATGTTCAACCACCCAAATGTAGCACCGAATGTCTTAACAAATCCAACTCCTCCTTTATCCTCTTCGTTTCTAGCCAATTCAGTCATTGACCCCAGTTCTACTACCACTACTTCTGCTACTACTACTTCATTATCACTATTGAGGAATACTGATTCGTTCGATCAGAGAAAAAATTCGATGGCAGCGATGAGGGAGATGATATTTCGAATTGCGGCAATGCAACCGGTACATATCGACCCAGAATCAGTGAAACCGCCAAAAAGGCGGAACGTGAAGATTTCTAAGGACCCACAAAGCGTAGCAGCCAGGCATAGAAGGGAGAGGATTAGTGAGAGGATAAGGATTTTGCAGAGATTGGTCCCAGGTGGAACCAAGATGGATACGGCGTCGATGCTTGATGAAGCTATTCATTATGTGAAGTTTTTGAAGAAACAAGTTCAAACATTAGAACAAGTTGGGGTTACTAATACTAGGCCGGGAATAGGGTTTTCTGGAACGGGGATGAATTGTTCGAACAACGTTAACTATTCTTCGGCATTGTTGAAAGCTAATCATAATCAGCAATCTCAACTAGTGGGGTCATTGCAAATGCTTAGGTGA 711 42.76 MDVDMINMMIQMETFPDDHDQVLLQNLYDEFPSGGPTMFNHPNVAPNVLTNPTPPLSSSFLANSVIDPSSTTTTSATTTSLSLLRNTDSFDQRKNSMAAMREMIFRIAAMQPVHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQVGVTNTRPGIGFSGTGMNCSNNVNYSSALLKANHNQQSQLVGSLQMLR 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 659774 660484 + Conep12aG0012600.1 Cone12ag0123 448967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0123 236 SMART finulus 136 185 IPR011598 GO:0046983(InterPro)
Cone12ag0123 236 FunFam BHLH transcription factor 133 196 - -
Cone12ag0123 236 Pfam Helix-loop-helix DNA-binding domain 139 180 IPR011598 GO:0046983(InterPro)
Cone12ag0123 236 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 45 225 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0123 236 Gene3D - 129 194 IPR036638 GO:0046983(InterPro)
Cone12ag0123 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 189 IPR036638 GO:0046983(InterPro)
Cone12ag0123 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0403 Cone-Chr10:1914169 Cone12ag0123 Cone-Chr12:659774 1.73E-21 dispersed
Cone12ag0027 Cone-Chr12:214122 Cone12ag0123 Cone-Chr12:659774 6.93E-37 dispersed
Cone12ag0123 Cone-Chr12:659774 Cone8ag0029 Cone-Chr8:191897 1.19E-37 dispersed
Cone9ag0909 Cone-Chr9:4475052 Cone12ag0123 Cone-Chr12:659774 5.85E-06 dispersed
Cone12ag0123 Cone-Chr12:659774 Cone4ag1582 Cone-Chr4:12098263 3.41E-54 wgd
Cone12ag0123 Cone-Chr12:659774 Cone7ag1368 Cone-Chr7:9902948 1.93E-56 wgd
Cone12ag0123 Cone-Chr12:659774 Cone8ag0130 Cone-Chr8:670288 2.98E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44414 PF13041 PPR_2 9.90E-12 CL0020 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0123 - - - 0.0