Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone12ag0123 | ATGGATGTTGACATGATTAACATGATGATTCAGATGGAAACATTCCCTGATGATCATGATCAAGTGCTACTGCAAAACCTCTACGATGAATTCCCTAGTGGCGGCCCTACCATGTTCAACCACCCAAATGTAGCACCGAATGTCTTAACAAATCCAACTCCTCCTTTATCCTCTTCGTTTCTAGCCAATTCAGTCATTGACCCCAGTTCTACTACCACTACTTCTGCTACTACTACTTCATTATCACTATTGAGGAATACTGATTCGTTCGATCAGAGAAAAAATTCGATGGCAGCGATGAGGGAGATGATATTTCGAATTGCGGCAATGCAACCGGTACATATCGACCCAGAATCAGTGAAACCGCCAAAAAGGCGGAACGTGAAGATTTCTAAGGACCCACAAAGCGTAGCAGCCAGGCATAGAAGGGAGAGGATTAGTGAGAGGATAAGGATTTTGCAGAGATTGGTCCCAGGTGGAACCAAGATGGATACGGCGTCGATGCTTGATGAAGCTATTCATTATGTGAAGTTTTTGAAGAAACAAGTTCAAACATTAGAACAAGTTGGGGTTACTAATACTAGGCCGGGAATAGGGTTTTCTGGAACGGGGATGAATTGTTCGAACAACGTTAACTATTCTTCGGCATTGTTGAAAGCTAATCATAATCAGCAATCTCAACTAGTGGGGTCATTGCAAATGCTTAGGTGA | 711 | 42.76 | MDVDMINMMIQMETFPDDHDQVLLQNLYDEFPSGGPTMFNHPNVAPNVLTNPTPPLSSSFLANSVIDPSSTTTTSATTTSLSLLRNTDSFDQRKNSMAAMREMIFRIAAMQPVHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQVGVTNTRPGIGFSGTGMNCSNNVNYSSALLKANHNQQSQLVGSLQMLR | 236 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 659774 | 660484 | + | Conep12aG0012600.1 | Cone12ag0123 | 448967 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone12ag0123 | 236 | SMART | finulus | 136 | 185 | IPR011598 | GO:0046983(InterPro) | |
Cone12ag0123 | 236 | FunFam | BHLH transcription factor | 133 | 196 | - | - | |
Cone12ag0123 | 236 | Pfam | Helix-loop-helix DNA-binding domain | 139 | 180 | IPR011598 | GO:0046983(InterPro) | |
Cone12ag0123 | 236 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 45 | 225 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone12ag0123 | 236 | Gene3D | - | 129 | 194 | IPR036638 | GO:0046983(InterPro) | |
Cone12ag0123 | 236 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 134 | 189 | IPR036638 | GO:0046983(InterPro) | |
Cone12ag0123 | 236 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 130 | 179 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone10ag0403 | Cone-Chr10:1914169 | Cone12ag0123 | Cone-Chr12:659774 | 1.73E-21 | dispersed | |
Cone12ag0027 | Cone-Chr12:214122 | Cone12ag0123 | Cone-Chr12:659774 | 6.93E-37 | dispersed | |
Cone12ag0123 | Cone-Chr12:659774 | Cone8ag0029 | Cone-Chr8:191897 | 1.19E-37 | dispersed | |
Cone9ag0909 | Cone-Chr9:4475052 | Cone12ag0123 | Cone-Chr12:659774 | 5.85E-06 | dispersed | |
Cone12ag0123 | Cone-Chr12:659774 | Cone4ag1582 | Cone-Chr4:12098263 | 3.41E-54 | wgd | |
Cone12ag0123 | Cone-Chr12:659774 | Cone7ag1368 | Cone-Chr7:9902948 | 1.93E-56 | wgd | |
Cone12ag0123 | Cone-Chr12:659774 | Cone8ag0130 | Cone-Chr8:670288 | 2.98E-137 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44414 | PF13041 | PPR_2 | 9.90E-12 | CL0020 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone12ag0123 | - | - | - | 0.0 |