Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0139 ATGTGGGATCTGAACGACTCGCCTGGTTGGAGAAGAGACGATGAATCGGAGGGCTGTTCTTCACCCAAGACTACTTCAATCGACGGCGATGATGATAAAGGAAAACGACCCGGATCCGTTTCCAATTCCAGCTCTTCGGTAGTTATTTTCGAAGATGATCAAGATGGATCCGATGAAGACCAGACCGCTGCCGACGTTAGAAGACTTGTTAAGAAGCGGAGCAACAACGGTAGGATGTTCGGCTTCCCGGAAACTGGCCGGCCCGTTACACGGCAATTTTTCCCGATCGACGGGCGCGACGAAGTCGGACAGGGCCCGGGCCCTGTTATGATGGATGTTGATCCAAGTGGTAGTGGTTATGGTACGGAAGGTAATTCTGTTGCGTTCCCTCTGGCTCACTGGGTTGGAGTAAAATTCTCTCATTCCGAGCCGCTGGGTGCGGTCAAGGCGGAGACTCAAGAGATTTCTCATCCGATTAAGAAGAGCCGGCGGGGACCGAGGTCTCGGAGCTCACAATATCGCGGGGTTACGTTTTACCGGAGGACCGGCCGGTGGGAATCTCACATATGGGATTGTGGGAAACAAGTGTATCTTGGTGGATTTGACACTGCGCATGCAGCTGCTCGTGCATATGATAGGGCAGCCATTAAGTTCCGAGGAATGGAGGCAGACATTAACTTTAGCATCAAAGACTATGAAGATGATATGAAACAGATGATCAATTTGACAAAGGAAGAGTTTGTGCATGTGCTCCGGCGGCAAAGCACGGGGTTTCCTAGAGGAAGCTCCAAGTATAGAGGGGTGACCTTGCATAAATGTGGAAGATGGGAAGCTAGAATGGGCCAATTTTTAGGCAAAAAGTACGTTTATTTGGGTTTGTTTGATACCGAGATTGAAGCTGCAAGGGCTTATGACAAAGCTGCCATTAAATGTAATGCCAAGGAAGCAGTCACCAACTTCGATCCAAGCATCTACGATGACGAGCTCAATGCTAATGCAAATGAATCTTCAAGAAATAAAGGTAATTATGAACACGATCTAGATTTGAGTTTAGGAAATTCAAGCTCAAAACAAGACAAGCAAAGTGCTTCAAGAAATGTTCATGAGGGATATTATAATAGGCCTGATCAGGTCAACAATGGAAGAGATAAGCAGCTTGAGACTGAAACCATGCAGCTTTTAAGCCAAACCCATCTTCAATATCCATCTAATCCCATTCTTGACATTAATCAAAGATATCGAAACTCCATTAGATGGTCTGGACATTCCCATTTACCTCAATATCCCCAAAATTATCAAAATGACTTTTTAAGCAGCAGCAATGGATTAGGAGGAGAAGAAAGGTATCATGAACTTTCATTGTCTATGAACACGAGCGATCGTCTACACGAACAATGGCAACTATCCGGTTCTTCTCAAATGTTTGCAAATGCTGCAGCATCATCAGGATTCCCACGACCTTCTTCACCACATGAGATCAGACATACCCAAAATCGGCTGCACAAAAATGGGTTTCACTAG 1521 45.76 MWDLNDSPGWRRDDESEGCSSPKTTSIDGDDDKGKRPGSVSNSSSSVVIFEDDQDGSDEDQTAADVRRLVKKRSNNGRMFGFPETGRPVTRQFFPIDGRDEVGQGPGPVMMDVDPSGSGYGTEGNSVAFPLAHWVGVKFSHSEPLGAVKAETQEISHPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGMEADINFSIKDYEDDMKQMINLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNAKEAVTNFDPSIYDDELNANANESSRNKGNYEHDLDLSLGNSSSKQDKQSASRNVHEGYYNRPDQVNNGRDKQLETETMQLLSQTHLQYPSNPILDINQRYRNSIRWSGHSHLPQYPQNYQNDFLSSSNGLGGEERYHELSLSMNTSDRLHEQWQLSGSSQMFANAAASSGFPRPSSPHEIRHTQNRLHKNGFH 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 721303 723965 - Conep12aG0014200.1 Cone12ag0139 448983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0139 506 SUPERFAMILY DNA-binding domain 263 323 IPR016177 GO:0003677(InterPro)
Cone12ag0139 506 MobiDBLite consensus disorder prediction 1 63 - -
Cone12ag0139 506 ProSiteProfiles AP2/ERF domain profile. 172 228 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0139 506 MobiDBLite consensus disorder prediction 333 382 - -
Cone12ag0139 506 ProSiteProfiles AP2/ERF domain profile. 264 321 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0139 506 MobiDBLite consensus disorder prediction 150 172 - -
Cone12ag0139 506 MobiDBLite consensus disorder prediction 478 506 - -
Cone12ag0139 506 MobiDBLite consensus disorder prediction 1 19 - -
Cone12ag0139 506 Pfam AP2 domain 263 311 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0139 506 Pfam AP2 domain 172 221 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0139 506 Gene3D AP2/ERF domain 263 322 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0139 506 Gene3D AP2/ERF domain 171 230 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0139 506 FunFam AP2-like ethylene-responsive transcription factor 171 230 - -
Cone12ag0139 506 CDD AP2 172 227 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0139 506 MobiDBLite consensus disorder prediction 348 368 - -
Cone12ag0139 506 SUPERFAMILY DNA-binding domain 171 229 IPR016177 GO:0003677(InterPro)
Cone12ag0139 506 CDD AP2 263 323 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0139 506 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 68 389 - -
Cone12ag0139 506 FunFam AP2-like ethylene-responsive transcription factor 263 323 - -
Cone12ag0139 506 SMART rav1_2 172 234 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0139 506 SMART rav1_2 264 327 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0139 Cone-Chr12:721303 Cone5ag1204 Cone-Chr5:5461638 3.84E-113 dispersed
Cone12ag0139 Cone-Chr12:721303 Cone6ag1405 Cone-Chr6:11297736 1.12E-131 wgd
Cone12ag0139 Cone-Chr12:721303 Cone8ag0138 Cone-Chr8:727322 2.28E-285 wgd
Cone12ag0139 Cone-Chr12:721303 Cone9ag1333 Cone-Chr9:10006464 1.48E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44416 PF00106 adh_short 1.20E-17 CL0063 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0139 K09284 - rcu:8260999 528.48