Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone12ag0139 | ATGTGGGATCTGAACGACTCGCCTGGTTGGAGAAGAGACGATGAATCGGAGGGCTGTTCTTCACCCAAGACTACTTCAATCGACGGCGATGATGATAAAGGAAAACGACCCGGATCCGTTTCCAATTCCAGCTCTTCGGTAGTTATTTTCGAAGATGATCAAGATGGATCCGATGAAGACCAGACCGCTGCCGACGTTAGAAGACTTGTTAAGAAGCGGAGCAACAACGGTAGGATGTTCGGCTTCCCGGAAACTGGCCGGCCCGTTACACGGCAATTTTTCCCGATCGACGGGCGCGACGAAGTCGGACAGGGCCCGGGCCCTGTTATGATGGATGTTGATCCAAGTGGTAGTGGTTATGGTACGGAAGGTAATTCTGTTGCGTTCCCTCTGGCTCACTGGGTTGGAGTAAAATTCTCTCATTCCGAGCCGCTGGGTGCGGTCAAGGCGGAGACTCAAGAGATTTCTCATCCGATTAAGAAGAGCCGGCGGGGACCGAGGTCTCGGAGCTCACAATATCGCGGGGTTACGTTTTACCGGAGGACCGGCCGGTGGGAATCTCACATATGGGATTGTGGGAAACAAGTGTATCTTGGTGGATTTGACACTGCGCATGCAGCTGCTCGTGCATATGATAGGGCAGCCATTAAGTTCCGAGGAATGGAGGCAGACATTAACTTTAGCATCAAAGACTATGAAGATGATATGAAACAGATGATCAATTTGACAAAGGAAGAGTTTGTGCATGTGCTCCGGCGGCAAAGCACGGGGTTTCCTAGAGGAAGCTCCAAGTATAGAGGGGTGACCTTGCATAAATGTGGAAGATGGGAAGCTAGAATGGGCCAATTTTTAGGCAAAAAGTACGTTTATTTGGGTTTGTTTGATACCGAGATTGAAGCTGCAAGGGCTTATGACAAAGCTGCCATTAAATGTAATGCCAAGGAAGCAGTCACCAACTTCGATCCAAGCATCTACGATGACGAGCTCAATGCTAATGCAAATGAATCTTCAAGAAATAAAGGTAATTATGAACACGATCTAGATTTGAGTTTAGGAAATTCAAGCTCAAAACAAGACAAGCAAAGTGCTTCAAGAAATGTTCATGAGGGATATTATAATAGGCCTGATCAGGTCAACAATGGAAGAGATAAGCAGCTTGAGACTGAAACCATGCAGCTTTTAAGCCAAACCCATCTTCAATATCCATCTAATCCCATTCTTGACATTAATCAAAGATATCGAAACTCCATTAGATGGTCTGGACATTCCCATTTACCTCAATATCCCCAAAATTATCAAAATGACTTTTTAAGCAGCAGCAATGGATTAGGAGGAGAAGAAAGGTATCATGAACTTTCATTGTCTATGAACACGAGCGATCGTCTACACGAACAATGGCAACTATCCGGTTCTTCTCAAATGTTTGCAAATGCTGCAGCATCATCAGGATTCCCACGACCTTCTTCACCACATGAGATCAGACATACCCAAAATCGGCTGCACAAAAATGGGTTTCACTAG | 1521 | 45.76 | MWDLNDSPGWRRDDESEGCSSPKTTSIDGDDDKGKRPGSVSNSSSSVVIFEDDQDGSDEDQTAADVRRLVKKRSNNGRMFGFPETGRPVTRQFFPIDGRDEVGQGPGPVMMDVDPSGSGYGTEGNSVAFPLAHWVGVKFSHSEPLGAVKAETQEISHPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGMEADINFSIKDYEDDMKQMINLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNAKEAVTNFDPSIYDDELNANANESSRNKGNYEHDLDLSLGNSSSKQDKQSASRNVHEGYYNRPDQVNNGRDKQLETETMQLLSQTHLQYPSNPILDINQRYRNSIRWSGHSHLPQYPQNYQNDFLSSSNGLGGEERYHELSLSMNTSDRLHEQWQLSGSSQMFANAAASSGFPRPSSPHEIRHTQNRLHKNGFH | 506 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 721303 | 723965 | - | Conep12aG0014200.1 | Cone12ag0139 | 448983 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone12ag0139 | 506 | SUPERFAMILY | DNA-binding domain | 263 | 323 | IPR016177 | GO:0003677(InterPro) | |
Cone12ag0139 | 506 | MobiDBLite | consensus disorder prediction | 1 | 63 | - | - | |
Cone12ag0139 | 506 | ProSiteProfiles | AP2/ERF domain profile. | 172 | 228 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone12ag0139 | 506 | MobiDBLite | consensus disorder prediction | 333 | 382 | - | - | |
Cone12ag0139 | 506 | ProSiteProfiles | AP2/ERF domain profile. | 264 | 321 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone12ag0139 | 506 | MobiDBLite | consensus disorder prediction | 150 | 172 | - | - | |
Cone12ag0139 | 506 | MobiDBLite | consensus disorder prediction | 478 | 506 | - | - | |
Cone12ag0139 | 506 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Cone12ag0139 | 506 | Pfam | AP2 domain | 263 | 311 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone12ag0139 | 506 | Pfam | AP2 domain | 172 | 221 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone12ag0139 | 506 | Gene3D | AP2/ERF domain | 263 | 322 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone12ag0139 | 506 | Gene3D | AP2/ERF domain | 171 | 230 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone12ag0139 | 506 | FunFam | AP2-like ethylene-responsive transcription factor | 171 | 230 | - | - | |
Cone12ag0139 | 506 | CDD | AP2 | 172 | 227 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone12ag0139 | 506 | MobiDBLite | consensus disorder prediction | 348 | 368 | - | - | |
Cone12ag0139 | 506 | SUPERFAMILY | DNA-binding domain | 171 | 229 | IPR016177 | GO:0003677(InterPro) | |
Cone12ag0139 | 506 | CDD | AP2 | 263 | 323 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone12ag0139 | 506 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 68 | 389 | - | - | |
Cone12ag0139 | 506 | FunFam | AP2-like ethylene-responsive transcription factor | 263 | 323 | - | - | |
Cone12ag0139 | 506 | SMART | rav1_2 | 172 | 234 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone12ag0139 | 506 | SMART | rav1_2 | 264 | 327 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag0139 | Cone-Chr12:721303 | Cone5ag1204 | Cone-Chr5:5461638 | 3.84E-113 | dispersed | |
Cone12ag0139 | Cone-Chr12:721303 | Cone6ag1405 | Cone-Chr6:11297736 | 1.12E-131 | wgd | |
Cone12ag0139 | Cone-Chr12:721303 | Cone8ag0138 | Cone-Chr8:727322 | 2.28E-285 | wgd | |
Cone12ag0139 | Cone-Chr12:721303 | Cone9ag1333 | Cone-Chr9:10006464 | 1.48E-140 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44416 | PF00106 | adh_short | 1.20E-17 | CL0063 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone12ag0139 | K09284 | - | rcu:8260999 | 528.48 |