Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0140 ATGGACGGCAGAGATGAAGAAAGAGATGGTACAGGGAGGAGGTGGACCCCCTTGTTAGAGAATCAGAGGCGGTACAAAGGAATAAGGATGAGGAAGTGGGGGAAATGGGTGGCGGAGATTCGAGAGCCGAACAAGCGCTCTAGAATATGGCTCGGCTCGTACTCATCTCCGGTCGCTGCGGCTCGAGCTTACGACACGGCGGTTTTCTATCTAAAAGGCCCCTCAGCTCGGCTCAATTTTCCTGAATTGTTAGCCGGAGAAAGGCGGGGGAAGGATCATGATCAGGAGGACGACATGTCAGCTGCTTCGATTAGGAAGAAAGCTACTGAAGTCGGAGCTCGTGTCGATGCTTTAGAGAGTTCTCTACATCATCATCGTCATCAACATCTTCACCGTCCAAATCATGATGAGCATGCATCGAAGGTGGGTAAGGAGTTTAAGTCTTGCGGTGGGTTATTGAATCGGGTTGACTTGAACAAGTTGCCCGACCCGGAAGATATAGATAGTGAGTGGGAGAGAAACTGTTGA 528 50.38 MDGRDEERDGTGRRWTPLLENQRRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFYLKGPSARLNFPELLAGERRGKDHDQEDDMSAASIRKKATEVGARVDALESSLHHHRHQHLHRPNHDEHASKVGKEFKSCGGLLNRVDLNKLPDPEDIDSEWERNC 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 726874 727785 - Conep12aG0014300.1 Cone12ag0140 448984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0140 175 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0140 175 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0140 175 SMART rav1_2 24 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0140 175 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677(InterPro)
Cone12ag0140 175 CDD AP2 24 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0140 175 MobiDBLite consensus disorder prediction 121 141 - -
Cone12ag0140 175 Pfam AP2 domain 24 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0140 175 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 20 171 - -
Cone12ag0140 175 FunFam Ethylene-responsive transcription factor 2 23 82 - -
Cone12ag0140 175 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0140 175 PRINTS Ethylene responsive element binding protein signature 63 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0140 Cone-Chr12:726874 Cone20ag0451 Cone-Chr20:2305341 5.36E-23 dispersed
Cone12ag0140 Cone-Chr12:726874 Cone17ag0855 Cone-Chr17:6783221 2.51E-51 wgd
Cone12ag0140 Cone-Chr12:726874 Cone20ag0201 Cone-Chr20:868165 5.05E-51 wgd
Cone12ag0140 Cone-Chr12:726874 Cone4ag1590 Cone-Chr4:12138815 9.46E-47 wgd
Cone12ag0140 Cone-Chr12:726874 Cone6ag1406 Cone-Chr6:11316885 2.08E-73 wgd
Cone12ag0140 Cone-Chr12:726874 Cone7ag1360 Cone-Chr7:9870629 2.63E-48 wgd
Cone12ag0140 Cone-Chr12:726874 Cone8ag0140 Cone-Chr8:740221 5.31E-99 wgd
Cone12ag0140 Cone-Chr12:726874 Cone9ag1335 Cone-Chr9:10025640 7.14E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44417 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0140 K09286 - csv:101214481 216.083