Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone12ag0154 | ATGCCGCCACCACCACAAGATCAAGCAGAGCCTCTGCTAATTTCGCAAGTAGAAGGAGTAGAAGGACAAGAAGAAGAAGAAGAAACCGCTTACGAGACAACCGAAAAGGTATTAATAATCGGAGTAGACGACGAAATAGAATCCGAATCGTCGGGCAAAACGCCGCCGTTTTCATGGAAGAAGCTCTGGCTATTTACCGGTCCTGGATTCCTAATGAGCATAGCGTTTCTGGATCCAGGGAATCTGGAAGGGGATCTTCAAGCAGGCGCGATTGCTGGCTACTCGTTGTTATGGCTGCTTCTGTGGGCCACGGTCATGGGTCTGCTTGTTCAGCTTCTGGCGGCTAGGCTAGGCGTGGCTACAGGTAGACACTTAGCCGAGCTGTGTAGGGAAGAGTATCCTGGTTGGGCGAGGATGGTGCTGTGGGTTATGGCTGAGTTGGCTCTGATCGGAGCCGATATTCAGGAGGTTATAGGGAGTGCTATTGCTATTAAGATTTTGAGTAATGGAGTTTTGCCTCTTTGGTCTGGAGTCATCATTACGGCTTGTGATTGTTTTATCTTCCTCTTTCTCGAAAATTACGGCGTAAGGAAACTAGAAGCAGTGTTTGCTGTTCTTATCGCCACAATGGCCATCTCATTCGCATGGATGTTCGGCGAAACAAAACCGAACGGCGTCGAGCTTCTTCTCGGTATTTTGATCCCGAAACTGAGCTCGAGAACAATAAAGCAAGCCGTAGGAGTAGTAGGTTGCATCATCATGCCTCATAACTTGTTCTTACACTCGGCTTTAGTACAATCCCGAGAAATCGATCACAAGAAGAAATCTCGAGTCCAAGAAGCTCTTAGATACTACTCCATTGAATCATCGCTTGCACTTTTCCTCTCATTTATTATCAATCTCTTTGTTACTACTGTTTTCGCCAAGGGCTTCTATGGTACCGATTTAGCCGAAAGTATCGGGCTTTTAAATGCCGGCCAATATCTTCAAGACAAATACGGCGGCGGGTTTTTCCCCATTTTGTATATATGGGGGATTGGCTTATTAGCGGCTGGTCAAAGTAGCACCATTACGGGTACTTATGCCGGCCAATTTATCATGGGCGGGTTTTTGAATTTGAGATTGAAGAAATGGATTCGGGCTTTAATTACTCGGAGCTTTGCGATCGTTCCCACTATGATCGTTGCTCTTGCTTTCGACACCTCAGAAGATATGTTGGATGTTTTGAACGAATGGCTTAACATTCTTCAGTCGATTCAAATCCCGTTTGCTCTTATTCCTCTTTTATGTTTGGTTTCAAAGGAGCAAATCATGGGGTCTTTCCAAATCGGGCCCGTTTTAAAGACGATATCATGGCTTGTGGCCGCATTGGTGATTGCGATCAACGGGTATCTTTTGGTTGACTTCTTCTTGTCTGAAGTCGATGGGGTGTTTTTCGGAGCGATTGTTTGCATTCTTACGGTTGCTTATGTTGTGTTTATCATCTACCTCATCTTCCGGATGGTTTCGATCTTCAGTTGGCGGAATCTAATTACACATGCCAAGATTCCAACAGATTCTGGGAATTGA | 1569 | 45.44 | MPPPPQDQAEPLLISQVEGVEGQEEEEETAYETTEKVLIIGVDDEIESESSGKTPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLLWATVMGLLVQLLAARLGVATGRHLAELCREEYPGWARMVLWVMAELALIGADIQEVIGSAIAIKILSNGVLPLWSGVIITACDCFIFLFLENYGVRKLEAVFAVLIATMAISFAWMFGETKPNGVELLLGILIPKLSSRTIKQAVGVVGCIIMPHNLFLHSALVQSREIDHKKKSRVQEALRYYSIESSLALFLSFIINLFVTTVFAKGFYGTDLAESIGLLNAGQYLQDKYGGGFFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWIRALITRSFAIVPTMIVALAFDTSEDMLDVLNEWLNILQSIQIPFALIPLLCLVSKEQIMGSFQIGPVLKTISWLVAALVIAINGYLLVDFFLSEVDGVFFGAIVCILTVAYVVFIIYLIFRMVSIFSWRNLITHAKIPTDSGN | 522 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 785958 | 788236 | + | Conep12aG0015700.1 | Cone12ag0154 | 448998 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone12ag0154 | 522 | Hamap | Divalent metal cation transporter MntH [mntH]. | 47 | 470 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone12ag0154 | 522 | NCBIfam | metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family | 60 | 438 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone12ag0154 | 522 | PANTHER | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER | 29 | 503 | IPR001046 | GO:0005384(PANTHER)|GO:0005774(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0042742(PANTHER)|GO:0046873(InterPro)|GO:0055072(PANTHER)|GO:2000379(PANTHER) | |
| Cone12ag0154 | 522 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| Cone12ag0154 | 522 | Pfam | Natural resistance-associated macrophage protein-like | 83 | 444 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone12ag0154 | 522 | NCBIfam | Nramp family divalent metal transporter | 67 | 436 | - | - | |
| Cone12ag0154 | 522 | PRINTS | Natural resistance-associated macrophage protein signature | 141 | 167 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone12ag0154 | 522 | PRINTS | Natural resistance-associated macrophage protein signature | 171 | 190 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone12ag0154 | 522 | PRINTS | Natural resistance-associated macrophage protein signature | 245 | 268 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone12ag0154 | 522 | PRINTS | Natural resistance-associated macrophage protein signature | 352 | 371 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone12ag0154 | 522 | PRINTS | Natural resistance-associated macrophage protein signature | 414 | 433 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone12ag0154 | 522 | PRINTS | Natural resistance-associated macrophage protein signature | 380 | 397 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone12ag0154 | 522 | PRINTS | Natural resistance-associated macrophage protein signature | 196 | 217 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone12ag0154 | Cone-Chr12:785958 | Cone20ag0432 | Cone-Chr20:2151827 | 1.91E-106 | dispersed | |
| Cone12ag0154 | Cone-Chr12:785958 | Cone4ag1604 | Cone-Chr4:12204799 | 4.22E-271 | wgd | |
| Cone12ag0154 | Cone-Chr12:785958 | Cone6ag1430 | Cone-Chr6:11472817 | 2.53E-287 | wgd | |
| Cone12ag0154 | Cone-Chr12:785958 | Cone7ag1346 | Cone-Chr7:9794788 | 2.86E-271 | wgd | |
| Cone12ag0154 | Cone-Chr12:785958 | Cone9ag1360 | Cone-Chr9:10187459 | 1.72E-285 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone12ag0154 | K21398 | - | vvi:100268041 | 832.017 |