Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0156 ATGGAGATATCATTGTTGAAAGTGCTTCTCGGACACATCTCCTCGTATTTTCGTTTGTCGTCTGGTGACAGCACAAACTTAGAGGCTGTATTGAAGTATCACCAAAAGGGAGAAGAGATACTGAAGCTGTTGAAGCCTGTACTTGATGCGATTGTTGATTCAGAAATAGCTTCTCAGGAAAAGCTTAATAAGGCATTTGAAGATCTGAGTCATTCAGTTGATGAATTAAGAGCTCTCTTTGAAAACTGGAAACCACTGTCAAGTAAAGTATATTTTGTTCTGCAAAGTGAAGCACTGATATCAAAGATTCAGAAATCTACCTTGGATACCTTTCAGATCCTTCAGTCCTCGCACGAATATCTCCCCGTTGAATTAAGCTCAACATCTATTGAGCTTTGCATTCAGAAAATTAAGCATATGGGAACTGAACAAACCTCTATTTCCATAAAAGATGCACTAAGAAATCAAGTAGAAGGTGTGGAGCCTAGCTCTGAAGCTCTGTTGAAAATTGCCGAGTCCTTGAATTTGAGGTCAAATGAGGGGATTCTGATCGAGGCTGTGGCCCTTGAGAAGCTGAAAGAAAAAGCCGAACAAGCTGAAAATGCTGGAGAAGTGGAGTATTTTGATCAAATTATTTCCATAGTAACCCTCTTGCATGAGCGTCTTACAGGGATAGATCAGTCCCAAATCCCAAGCTCTGTTCCAATCCCAGCTGATTTCTGTTGTCCTCTCTCGCTCAAGCTTATGACAGATCCAGTGATAGTATCATCTGGACAAACTTATGAGAGGGCTTTTATCAAGAGATGGATCGATCTTGGTCTCAATGTTTGTCCAAAGACAAGGCAGACATTGACTCACACTAATCTGATTCCAAATTACACAGTTAAGGCACTAATCGCAAACTGGTGTGAGCTAAATAATGTAAAGCTCCCTGACCCAACAAAGTCTATCATCTTAAACAATGTGAGCTTAGAATGGAAAAATCAGTCTATGGGTTTTCCTGGAAAGAAAGTAAATTCATCTAGTGGTAGTACAACACATCGAGAGGGCACTTCTCCATTGGATGACTCCTTGACTACTGCTACTAATGGACCAGGTTTAGATATCACAAGAATATCACGACAAAATTCCGGAGACAAGTTACCTGAGTCGGAAGAAAAATGTGGGCATTCCGCACCATCGCAAACAAATCTTCAGGAAATAAGTGGGGTTGAACTTGACCTGCCTCAGAATCATAACAGAACTTCCTCTGCCTCTAGTGTAGTTTCTGATTCGGGATTTCCTCAAGGAAATTTAGGAGACAACAATGAAGCTTACAGCAGTGATAACTCAGGGGAGGTGAGATCAGAGCCGCCTCCTAACACTACTCCCTTAACGGCCCCACAAAGAGAGCCAGAATATTCACCTAGATTGGTGGAGGCAAGAACTCGGACCCATTCTATCTGGCGTAGACCATCCGAGAGGTATGTCCCAAAAATAATTTCTTCCTCTGCTAGTGAAACAAGGCCTGATCTTTCTGGCATTGAAACCCAAGTCAAGGGCCTTGTAGAGGACTTAAAGAGCGATTCATATGAGACCTTACGGGCCGCGACAGCAGAGATCCGGTTGCTTGCCAAACACAATATGGATAATCGGATTGTGATTTCCAATTGTGGGGCCATCAACTTTCTAGTCGATTTACTCCGCTCAAACGACTTGAAAATCCAAGAAAATGCTGTTACTGCCCTTTTAAACTTATCAATCAATGATAATAACAAAACCGCCATTGCTCAAGCCAACGCTATAGAACCATTGATTTATGTTCTTGAAACCGGAAGCCCAGAAGCGAAAGAGAACTCTGCCGCCACTCTGTTTAGCATTTCCGTGATCGAGGATAACAAGGCCAAGATTGGACGGTCTGGAGCGATTGGTCCTTTAGTTGATCTATTGGGAAATGGTACTCCAAGAGGTAAAAAAGATGCAGCCACAGCCTTGTTTAATTTATCGATTTTTCATGAAAATAAGAGTAGGATTGTAGAGGCGGGAGCTGTTAAGTATCTTGTGGAGTTGATGGACCCAGCGGCTGGCATGGTTGATAAGGCTGTTGCTGTTTTGGCTAATCTGGCTACAGTTCTGGAGGGAAGGACTGCTATTGGTGAGGAAGGTGGGATTCCAGCTTTGGTTGAGGTTGTTGAGTTGGGTTCAGGTCGAGGTAAGGAGAATGCGGCTGCTGCTTTGTTGCAGCTTTGTACGACAAGTAGTAGGTTTTGCAATACGGTGCTTCAAGAAGGGGCGGTCCCGCCTTTAGTGGCATTGTCGCAATCTGGTACCCCAAGGGCCAAAGAAAAGGCACAGGCACTTCTAAGCTTCTTCAGAAACCATAGACAACAAGGTAATGCTGCAAGAAGTTGA 2391 43.29 MEISLLKVLLGHISSYFRLSSGDSTNLEAVLKYHQKGEEILKLLKPVLDAIVDSEIASQEKLNKAFEDLSHSVDELRALFENWKPLSSKVYFVLQSEALISKIQKSTLDTFQILQSSHEYLPVELSSTSIELCIQKIKHMGTEQTSISIKDALRNQVEGVEPSSEALLKIAESLNLRSNEGILIEAVALEKLKEKAEQAENAGEVEYFDQIISIVTLLHERLTGIDQSQIPSSVPIPADFCCPLSLKLMTDPVIVSSGQTYERAFIKRWIDLGLNVCPKTRQTLTHTNLIPNYTVKALIANWCELNNVKLPDPTKSIILNNVSLEWKNQSMGFPGKKVNSSSGSTTHREGTSPLDDSLTTATNGPGLDITRISRQNSGDKLPESEEKCGHSAPSQTNLQEISGVELDLPQNHNRTSSASSVVSDSGFPQGNLGDNNEAYSSDNSGEVRSEPPPNTTPLTAPQREPEYSPRLVEARTRTHSIWRRPSERYVPKIISSSASETRPDLSGIETQVKGLVEDLKSDSYETLRAATAEIRLLAKHNMDNRIVISNCGAINFLVDLLRSNDLKIQENAVTALLNLSINDNNKTAIAQANAIEPLIYVLETGSPEAKENSAATLFSISVIEDNKAKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIFHENKSRIVEAGAVKYLVELMDPAAGMVDKAVAVLANLATVLEGRTAIGEEGGIPALVEVVELGSGRGKENAAAALLQLCTTSSRFCNTVLQEGAVPPLVALSQSGTPRAKEKAQALLSFFRNHRQQGNAARS 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 793911 798910 + Conep12aG0015900.1 Cone12ag0156 449000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0156 796 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 675 716 IPR000225 GO:0005515(InterPro)
Cone12ag0156 796 MobiDBLite consensus disorder prediction 409 472 - -
Cone12ag0156 796 SUPERFAMILY RING/U-box 234 313 - -
Cone12ag0156 796 MobiDBLite consensus disorder prediction 333 396 - -
Cone12ag0156 796 CDD RING-Ubox_PUB 237 289 IPR045210 -
Cone12ag0156 796 MobiDBLite consensus disorder prediction 333 377 - -
Cone12ag0156 796 Pfam U-box domain 236 306 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone12ag0156 796 Gene3D - 492 796 IPR011989 -
Cone12ag0156 796 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 309 IPR013083 -
Cone12ag0156 796 Coils Coil 182 202 - -
Cone12ag0156 796 SUPERFAMILY ARM repeat 512 784 IPR016024 -
Cone12ag0156 796 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 634 676 IPR000225 GO:0005515(InterPro)
Cone12ag0156 796 MobiDBLite consensus disorder prediction 409 453 - -
Cone12ag0156 796 FunFam RING-type E3 ubiquitin transferase 235 310 - -
Cone12ag0156 796 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone12ag0156 796 PANTHER U BOX DOMAIN-CONTAINING 31 787 - -
Cone12ag0156 796 Pfam Armadillo/beta-catenin-like repeat 543 580 IPR000225 GO:0005515(InterPro)
Cone12ag0156 796 Pfam Armadillo/beta-catenin-like repeat 625 662 IPR000225 GO:0005515(InterPro)
Cone12ag0156 796 Pfam Armadillo/beta-catenin-like repeat 582 621 IPR000225 GO:0005515(InterPro)
Cone12ag0156 796 FunFam RING-type E3 ubiquitin transferase 495 790 - -
Cone12ag0156 796 SMART Ubox_2 239 302 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone12ag0156 796 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 552 594 IPR000225 GO:0005515(InterPro)
Cone12ag0156 796 SMART arm_5 623 663 IPR000225 GO:0005515(InterPro)
Cone12ag0156 796 SMART arm_5 664 703 IPR000225 GO:0005515(InterPro)
Cone12ag0156 796 SMART arm_5 541 581 IPR000225 GO:0005515(InterPro)
Cone12ag0156 796 SMART arm_5 704 744 IPR000225 GO:0005515(InterPro)
Cone12ag0156 796 SMART arm_5 582 622 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0156 Cone-Chr12:793911 Cone7ag0992 Cone-Chr7:7652318 3.72E-95 dispersed
Cone12ag0156 Cone-Chr12:793911 Cone6ag1431 Cone-Chr6:11480343 3.13E-221 wgd
Cone12ag0156 Cone-Chr12:793911 Cone8ag0150 Cone-Chr8:776871 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0156 - - - 0.0