Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0168 ATGTTTTGGGTTACAGAAATGGATACCACTTATACTTTGTTTAGAGACGTAGTCTCTACTCTTCAACCTGATCAATATCATCCTCATCATCTTCATCTTCATTCATATAATTCAAGTAGAAGTACTACTACTGCTACTACTAATTCTTCGAATTCTAAATCCTTCACTCAAAAATATTCTCAAGCAGAAGAAGAAGAAGAAGAAGAAGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGACTTTCCATCGCCTTCTTCCAAACACTTGTACTACCCTACTAATTATAGTTACAATAATCAACCCCACGGCGACGGCCGCCACCCACTTTCCTCCGAGACTACCTCCGCCACCGTTACTGCTTCCACTTCACCGGCTTTAACTAGCACCGATCAATTTCCCTTGGAGCTAATCTCCGGCAAGAACTGGGCTTCCGACCTACTCCTCGAAATTGCCCGATCAATCTCCAATAAGAACAGCACACGTGTACAACAACTCATGTGGATGCTCAACGAGCTAAGCTCACCCTACGGCGACACTGACCAGAAGATCGCCGCTTATTTCCTCCAAGCACTTTTCAGCCGCATAACTGACTCCGGTCAACGCTGCTACCGAACTTTGACCTCTTCATTGGAGAAAACGTCGTCTTTCTACTCCACGAGAAAAATGCTTCTCAAATTTCAAGAAGTAAGCCCTTGGACTACTTTCGGTCACGTAGCATGTAATGGCGCAATTCTAGAAGCCTTAGACGGCGAAAACAAGCTCCACATTATCGATATCAGCAACACTTATTGCACACAATGGCCCACCTTGCTCGAATTACTTGCCACTCGATCTGACGAGACCCCTCATCTCCGGCTAACCAGCGTGATCGCTGCGAAAACCGTCGGAGTATCATCTACGTCGCAAAAGGTAATGAAAGAGATCGGAGCTCGTTTGGAGAGATTTGCTAGGCTTATGGGCGTTCCTTTTAAGTTCAAAGTGATCTATCATTCTACTGATCTTTCCGAATTGAACGTCGACGTATTGGGTATCGAAGAAGACGAAGCGATTGCTGTAAATTGCGTCGGAACGTTGCATTCTATAGCGACGGTTAGTAACCGTCGGGAAATGTTGATCTCTTTGTTTCGCAGTTTGGGACCTCGCGTTTTGACTATCGTTGAAGAGGAAGCCGAGCTGGATATTGGGTTTGATGGGCCGGAATTCGTAAAGGGTTTCTCGGAGTGTTTAAGATGGTTTCGGGTCTACTTCGAGACGTTAGAGGAGAGTTTTACGAGGACGAGTAACGAGCAGCTCATGCTTGAGCGAGCGGCTGGGCGAGCCGTGGTCAACTTGGTGGCTTGCATGCCGGATGAGTCTGTCGAGCGGAGACAGTTGGCCGCAAGCTGGGTGAGCAGGCTTCATGGGTGTGGGTTCAATGCGGTGTCGTTTAGCGATGAGGTTTGTGACGACGTCAGAGCGCTGTTGAGAAGGTATAAGGAGGGATGGGCGATGACGTCAGAGGGATCTGCAGGCGCCGGAATATTCTTGACGTGGAAGGACCAGCCGGTGGTGTGGACCAGTGTTTGGAGGCCTTGA 1578 47.59 MFWVTEMDTTYTLFRDVVSTLQPDQYHPHHLHLHSYNSSRSTTTATTNSSNSKSFTQKYSQAEEEEEEEEECFNFFMDEEDFPSPSSKHLYYPTNYSYNNQPHGDGRHPLSSETTSATVTASTSPALTSTDQFPLELISGKNWASDLLLEIARSISNKNSTRVQQLMWMLNELSSPYGDTDQKIAAYFLQALFSRITDSGQRCYRTLTSSLEKTSSFYSTRKMLLKFQEVSPWTTFGHVACNGAILEALDGENKLHIIDISNTYCTQWPTLLELLATRSDETPHLRLTSVIAAKTVGVSSTSQKVMKEIGARLERFARLMGVPFKFKVIYHSTDLSELNVDVLGIEEDEAIAVNCVGTLHSIATVSNRREMLISLFRSLGPRVLTIVEEEAELDIGFDGPEFVKGFSECLRWFRVYFETLEESFTRTSNEQLMLERAAGRAVVNLVACMPDESVERRQLAASWVSRLHGCGFNAVSFSDEVCDDVRALLRRYKEGWAMTSEGSAGAGIFLTWKDQPVVWTSVWRP 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 849079 850812 + Conep12aG0017100.1 Cone12ag0168 449012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0168 525 ProSiteProfiles GRAS family profile. 135 524 IPR005202 -
Cone12ag0168 525 MobiDBLite consensus disorder prediction 35 58 - -
Cone12ag0168 525 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 95 523 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0045930(PANTHER)|GO:0048366(PANTHER)|GO:0055072(PANTHER)
Cone12ag0168 525 MobiDBLite consensus disorder prediction 32 67 - -
Cone12ag0168 525 Pfam GRAS domain family 146 524 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0652 Cone-Chr11:4329408 Cone12ag0168 Cone-Chr12:849079 9.63E-134 dispersed
Cone12ag0168 Cone-Chr12:849079 Cone18ag0859 Cone-Chr18:5906894 1.66E-136 dispersed
Cone12ag0161 Cone-Chr12:815494 Cone12ag0168 Cone-Chr12:849079 2.98E-49 proximal
Cone12ag0168 Cone-Chr12:849079 Cone6ag1458 Cone-Chr6:11652857 3.39E-204 wgd
Cone12ag0168 Cone-Chr12:849079 Cone8ag0163 Cone-Chr8:841984 1.47E-284 wgd
Cone12ag0168 Cone-Chr12:849079 Cone9ag1379 Cone-Chr9:10321643 1.12E-198 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44421 PF02458 Transferase 2.90E-09 CL0149 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0168 K27743 - mdm:103415371 625.935