Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0173 ATGGGTGCGCCTAAACAAAAATGGACAGCTGAAGAAGAAGCAGCCCTTAAAGCAGGAGTAATTAAACATGGGGCGGGAAAATGGCGTGCGATCCTTACAGATTCCGAATTCAGTGCCATTCTGCATCTTCGATCCAATGTAGATCTCAAGGACAAATGGAGAAACATAAATGTGACTGCAATATGGGGTTCTAGGCAGAAGGCTAAGCTTGCGCTTAAAACAAATCTTCCAGCTCTTCAAAATCATGAAACTGCTCTAGCTGGAAGCATTGTGGTTCACGCTGATGAAGGGATTGTTGATGCTAAGCCTCTTGTGGTTTCTAATAGAACATTGAAGACTCCAAGCTCAAAAGAACCAGTTGCAAGGTTAGACAAACTTATATCAGAGGCTATTAGAAACCTAGAGGAGCCAAGGGGTTCTGACAGGGCTGCAATTGCTCTGTACATAGAGGAAAACTACTGGGCACCTCCAAACCTAAAAAAGCTACTATCGGCAAAATTAAGGCATATGACTGCAAATGGCAAGCTGATAAAGGTGAAGCATAGGTACCGGATTGCACCAAGTTCAACATTTTCTGGGAAAAGAAAAGGTTCTTCACTATTACTCCTGGAGGGAAAACAAGACTCTTCTTCAAAGGCCGAGAGAAGTGAAGTCAACATCATTTCCAGATCTCAGGTTGACTCGGACCAATCAACCATGAGAAGAATGACTGCAGAGGAGGCTGCTGTAGCCGCTGCAAGAGCAGTTGCCGAGGCAGAAGCCGCCATCTCAGCGGCAGAGGTGGCAGCCAGAGAGGCTGAGGCAGCAGAAGCTGAAGCTGAAGCAGCAAAAGCTTTTGCTGAAGCAGCTTTGAGAGCATTGGAATGCAGAACCCTTCAAGCTAGGTAA 888 45.83 MGAPKQKWTAEEEAALKAGVIKHGAGKWRAILTDSEFSAILHLRSNVDLKDKWRNINVTAIWGSRQKAKLALKTNLPALQNHETALAGSIVVHADEGIVDAKPLVVSNRTLKTPSSKEPVARLDKLISEAIRNLEEPRGSDRAAIALYIEENYWAPPNLKKLLSAKLRHMTANGKLIKVKHRYRIAPSSTFSGKRKGSSLLLLEGKQDSSSKAERSEVNIISRSQVDSDQSTMRRMTAEEAAVAAARAVAEAEAAISAAEVAAREAEAAEAEAEAAKAFAEAALRALECRTLQAR 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 863163 866942 - Conep12aG0017600.1 Cone12ag0173 449017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0173 295 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Cone12ag0173 295 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
Cone12ag0173 295 Coils Coil 249 290 - -
Cone12ag0173 295 CDD SANT_TRF 6 57 - -
Cone12ag0173 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Cone12ag0173 295 FunFam Telomere repeat-binding factor 1 2 58 - -
Cone12ag0173 295 SMART sant 4 59 IPR001005 -
Cone12ag0173 295 Gene3D - 114 200 IPR036388 -
Cone12ag0173 295 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Cone12ag0173 295 PANTHER SINGLE MYB HISTONE 4 1 289 IPR044597 GO:0003691(InterPro)
Cone12ag0173 295 SUPERFAMILY Winged helix DNA-binding domain 117 196 IPR036390 -
Cone12ag0173 295 Gene3D - 2 59 - -
Cone12ag0173 295 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 187 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone12ag0173 295 SMART h15plus2 110 182 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone12ag0173 295 Pfam linker histone H1 and H5 family 124 181 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0173 Cone-Chr12:863163 Cone3ag1033 Cone-Chr3:29123410 8.97E-82 dispersed
Cone12ag0173 Cone-Chr12:863163 Cone8ag0167 Cone-Chr8:853030 1.67E-156 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44422 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0173 K09422 - csv:101202913 341.658