Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0173 ATGGGTGCGCCTAAACAAAAATGGACAGCTGAAGAAGAAGCAGCCCTTAAAGCAGGAGTAATTAAACATGGGGCGGGAAAATGGCGTGCGATCCTTACAGATTCCGAATTCAGTGCCATTCTGCATCTTCGATCCAATGTAGATCTCAAGGACAAATGGAGAAACATAAATGTGACTGCAATATGGGGTTCTAGGCAGAAGGCTAAGCTTGCGCTTAAAACAAATCTTCCAGCTCTTCAAAATCATGAAACTGCTCTAGCTGGAAGCATTGTGGTTCACGCTGATGAAGGGATTGTTGATGCTAAGCCTCTTGTGGTTTCTAATAGAACATTGAAGACTCCAAGCTCAAAAGAACCAGTTGCAAGGTTAGACAAACTTATATCAGAGGCTATTAGAAACCTAGAGGAGCCAAGGGGTTCTGACAGGGCTGCAATTGCTCTGTACATAGAGGAAAACTACTGGGCACCTCCAAACCTAAAAAAGCTACTATCGGCAAAATTAAGGCATATGACTGCAAATGGCAAGCTGATAAAGGTGAAGCATAGGTACCGGATTGCACCAAGTTCAACATTTTCTGGGAAAAGAAAAGGTTCTTCACTATTACTCCTGGAGGGAAAACAAGACTCTTCTTCAAAGGCCGAGAGAAGTGAAGTCAACATCATTTCCAGATCTCAGGTTGACTCGGACCAATCAACCATGAGAAGAATGACTGCAGAGGAGGCTGCTGTAGCCGCTGCAAGAGCAGTTGCCGAGGCAGAAGCCGCCATCTCAGCGGCAGAGGTGGCAGCCAGAGAGGCTGAGGCAGCAGAAGCTGAAGCTGAAGCAGCAAAAGCTTTTGCTGAAGCAGCTTTGAGAGCATTGGAATGCAGAACCCTTCAAGCTAGGTAA 888 45.83 MGAPKQKWTAEEEAALKAGVIKHGAGKWRAILTDSEFSAILHLRSNVDLKDKWRNINVTAIWGSRQKAKLALKTNLPALQNHETALAGSIVVHADEGIVDAKPLVVSNRTLKTPSSKEPVARLDKLISEAIRNLEEPRGSDRAAIALYIEENYWAPPNLKKLLSAKLRHMTANGKLIKVKHRYRIAPSSTFSGKRKGSSLLLLEGKQDSSSKAERSEVNIISRSQVDSDQSTMRRMTAEEAAVAAARAVAEAEAAISAAEVAAREAEAAEAEAEAAKAFAEAALRALECRTLQAR 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 863163 866942 - Conep12aG0017600.1 Cone12ag0173 449017

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0173 295 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Cone12ag0173 295 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
Cone12ag0173 295 Coils Coil 249 290 - -
Cone12ag0173 295 CDD SANT_TRF 6 57 - -
Cone12ag0173 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Cone12ag0173 295 FunFam Telomere repeat-binding factor 1 2 58 - -
Cone12ag0173 295 SMART sant 4 59 IPR001005 -
Cone12ag0173 295 Gene3D - 114 200 IPR036388 -
Cone12ag0173 295 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Cone12ag0173 295 PANTHER SINGLE MYB HISTONE 4 1 289 IPR044597 GO:0003691(InterPro)
Cone12ag0173 295 SUPERFAMILY Winged helix DNA-binding domain 117 196 IPR036390 -
Cone12ag0173 295 Gene3D - 2 59 - -
Cone12ag0173 295 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 187 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone12ag0173 295 SMART h15plus2 110 182 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone12ag0173 295 Pfam linker histone H1 and H5 family 124 181 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0173 K09422 - - csv:101202913 341.658
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0173 Cone-Chr12:863163 Cone3ag1033 Cone-Chr3:29123410 8.97E-82 dispersed
Cone12ag0173 Cone-Chr12:863163 Cone8ag0167 Cone-Chr8:853030 1.67E-156 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g722 . Blo03g00069 Bda06g01187 . Bpe07g00280 . . Bma12g00288 . . . . . . . . . . . . . . . . Cla10g00975 Cam10g0998 Cec10g1028 Cco10g0991 Clacu10g1019 Cmu10g1802 Cre10g1176 . . Cone8ag0167 Cone12ag0173 . . . . . . . . . . . . . Cmo04g00473 Cmo16g00332 . . . . Cpe14g00260 Cpe01g00396 Bhi11g01125 . . . . . . . . . . . . . Lsi03g01014 . . Cme07g02198
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone3ag1033 . 1 297 Single Myb Histone (SMH) Gene Family AT1G49950 68.0 2.8e-85 312.8
Cone12ag1042 . 1 287 Single Myb Histone (SMH) Gene Family AT1G49950 56.4 2.1e-64 243.4
Cone8ag0167 . 1 248 Single Myb Histone (SMH) Gene Family AT1G49950 52.6 8.1e-61 231.5
Cone12ag0173 . 1 249 Single Myb Histone (SMH) Gene Family AT1G49950 51.0 9.9e-59 224.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003466 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 4 4 0 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44422 None None None None Cone TF