Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone12ag0180 | ATGGAGCTTTACTGTCTGATTGCAACTCTATTCACAGCGTTGGGATTGCTGGCAGGGCTTTTGGTCTACTTATATGAGCCCTACTGGGCTGTCAGAAAGGTGCCTGGTCCTCCAGCCTATCCTCTTGTAGGACACCTCCCCTACATCGCTAAATACGGCCCTCACATTTTCAGTGTCTTTGCCAAACGCTATGGCCCCATTTTCAGGTTTCATATGGGTAGGCAGCCATTGATAATCATAGCAGATGCAGAGCTTTGTAGAGAAGTTGGGATTAGGAGATTCAAAGAATTTCCAAATAGAAGCATTCCTTCTCCAATCTCTGCCACCCCTATTCATCAAAAGGGCCTTTTCTTCACTAAGGATGCAAGATGGTCCACGATGAGAAATACCATAGTATCCATGTATCAACCTTCGTACATAGCCAGCTTAATCCCCACAATGCAATCCTTCATTGAATCAGGAACTGAAAACCTTCATGAAAAACAAGAACAAGACATCCCTTTCTGTAGTTTCTCGCTCAAACTATCCACAGACGTTATCGGACAAGCCGCTTTTGGAGTTGACTTCGGCCTCTCCAAACCCGCGGGTGAAACGAACATCCAGAAAGACAGCAACGATACAAACAACCACGTTTCGGAATTCATTGACCAGCACATCTACTCCACAACAAAACTTAAGATGGACTTTTCCGGTTCCTTCTCAATGATACTCGGATTACTCGTTCCGATCCTTCAAGAACCAGTCAGACAGATTCTCAAGAGAATTCCGGGAACTATGGACTGGAAACTCGATCGAACAAATGAAAATCTATGCGGCGGGCTCATGAAAATTGTCGAAAAGAGAATGCAGGAAATAAACAATGATTCTAAAGACTTCTTGTCACGTATATCTAGTGCAAGAGAATCTAAGACATTGTCTGAAAATGTTTTCACTCAGGACTACATTGATGCACTTGCTTACGAGCAATTACTTGCCGGATCAACTACTACATCCTTCACTTTGACTTGTATTGTTTATTTAGTTGCATCTCACCCGGAAGTAGAGAGAAAACTGCTAGCTGAGATCGATGGATATGGTCAGCCGGATAAGATACCTACGGCCGATGATCTTCAGAACAAGTTCCCATATCTTGATCAGGTGATAAAAGAGGCTATGAGATTCTACATTTCCTCTCCTATTATAGCTAGAGAAGCATCTAAAGAAGTAGAGATTGGTGGCTATATTCTCCCCAAGGGAACATGGATTTGGTTAGCGCCAGAGGTTTTATCGAAAGATGCGAGAAACTTCCCGGAACCTGAGAAGTTCAGACCGGAGAGGTTTGATCCAGAATGTGAAGAAGAGAAACAGCGGCATCCATATGCTTTGATACCATTTGGAATTGGACCTAGAGCGTGTATTGGGCAGAAGTTTTCTCTACAGGAGATGAAGCTTACTCTCATTCATTTATACAGGAGATATGTTTTTCAACATTCACCCGACTCAGAACACCCGCCTGAGCTCGAGTATGGAATCATTCTTAACTTCAAGAATGAAGTCAAGTTCAGAGTAAAAAAACGCACATGA | 1563 | 42.99 | MELYCLIATLFTALGLLAGLLVYLYEPYWAVRKVPGPPAYPLVGHLPYIAKYGPHIFSVFAKRYGPIFRFHMGRQPLIIIADAELCREVGIRRFKEFPNRSIPSPISATPIHQKGLFFTKDARWSTMRNTIVSMYQPSYIASLIPTMQSFIESGTENLHEKQEQDIPFCSFSLKLSTDVIGQAAFGVDFGLSKPAGETNIQKDSNDTNNHVSEFIDQHIYSTTKLKMDFSGSFSMILGLLVPILQEPVRQILKRIPGTMDWKLDRTNENLCGGLMKIVEKRMQEINNDSKDFLSRISSARESKTLSENVFTQDYIDALAYEQLLAGSTTTSFTLTCIVYLVASHPEVERKLLAEIDGYGQPDKIPTADDLQNKFPYLDQVIKEAMRFYISSPIIAREASKEVEIGGYILPKGTWIWLAPEVLSKDARNFPEPEKFRPERFDPECEEEKQRHPYALIPFGIGPRACIGQKFSLQEMKLTLIHLYRRYVFQHSPDSEHPPELEYGIILNFKNEVKFRVKKRT | 520 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 896310 | 898115 | - | Conep12aG0018300.1 | Cone12ag0180 | 449024 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone12ag0180 | 520 | Pfam | Cytochrome P450 | 35 | 503 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone12ag0180 | 520 | PANTHER | THROMBOXANE-A SYNTHASE | 7 | 519 | - | - | |
| Cone12ag0180 | 520 | SUPERFAMILY | Cytochrome P450 | 35 | 519 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone12ag0180 | 520 | FunFam | Cytochrome P450 3A4 | 21 | 520 | - | - | |
| Cone12ag0180 | 520 | Gene3D | Cytochrome P450 | 22 | 520 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone12ag0180 | 520 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 458 | 467 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cone12ag0180 | 520 | PRINTS | P450 superfamily signature | 325 | 342 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone12ag0180 | 520 | PRINTS | P450 superfamily signature | 456 | 465 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone12ag0180 | 520 | PRINTS | P450 superfamily signature | 465 | 476 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone12ag0180 | 520 | PRINTS | P450 superfamily signature | 379 | 390 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone12ag0180 | 520 | PRINTS | E-class P450 group I signature | 61 | 80 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone12ag0180 | 520 | PRINTS | E-class P450 group I signature | 465 | 488 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone12ag0180 | 520 | PRINTS | E-class P450 group I signature | 378 | 396 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone12ag0180 | 520 | PRINTS | E-class P450 group I signature | 455 | 465 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone12ag0180 | 520 | PRINTS | E-class P450 group I signature | 334 | 360 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone12ag0180 | 520 | PRINTS | E-class P450 group I signature | 314 | 331 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cone12ag0180 | 520 | PRINTS | E-class P450 group I signature | 418 | 442 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone12ag0180 | Cone-Chr12:896310 | Cone4ag1668 | Cone-Chr4:12507249 | 6.73e-313 | dispersed | |
| Cone12ag0180 | Cone-Chr12:896310 | Cone5ag0921 | Cone-Chr5:3943056 | 1.35E-28 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone12ag0180 | K20771 | - | rcu:8274543 | 765.763 |