Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0187 ATGGAGAGCAGAGCCGCCATACCAGGGCTGAAGCCAAATTCCCTGCTTTGCCCGTCCCCTTCTCGTCATTCCTCCACTCTCTTCCATTTCTATTCATCGTCCCCTTCCTTATTTGACAGCGCCATTTCTTCTGCTGCTTCCTCTCTCAAAATTCAAAGCCAGAAGCAGATTCAATTTGGCTCTCACAATGTTCGTCAAGCTCTTCCTCACCTCAGGAGCCTGCCTTCCTTATCTGATACCTACAGTGAGACACTGGAATCAGCTCACATAGAATGGGATAACCTTGGATTTGGGTTGCTTCCTACTGATTATATGTACAGTATGAAATGTACTAGAGATGGAACCTTTTCTGGAGGTGAATTACAACGTTTTGGAAATATCGAAATCAGTCCTGGAGCCGGAGTCTTAAATTATGGGCAGGGATTATTTGAAGGTCTAAAAGCATACAAGACAAAAGATGGAAGGGTACTCCTGTTTCGTCCAGAGGAAAATGCATTGCGCATGAGGATGGGTGCTGAGAGGATGTGTATGCCTTCACCAACTGTTGATCAATTTCTAGAAGCTGTAAATGCTACAGTTTTGGCAAACAAACGATGGATTCCTCCTCCAGGAAAAGGTTCCTTATATATCAGGCCATTGCTGATGGGAAGTGGAGCTGTTCTTGGTCTTGCACCAGCTCCAGAGTACACCTTTCTTATTTTTGTTTCACCAGTTGGCAACTATTTCAAGGAAGGTGTTGCACCAATAAATTTGATTGTCGAGAATGAGTTACATCGTGCAACTCCTGGTGGTACTGGAGGTGTAAAAACTATAGGCAACTATGCTGCGGTTTTGAAGGCACAGTCTGCTGCAAAAGCAAAGGGCTACTCAGATGTTTTGTACCTTGACTGTGTTAACAAAACATCTCTGGAGGAGGTGTCATCTTGCAACATTTTTGTTGTGAAGGGCAATGTTATCTCCACTCCTGAAATAAAAGGGACAATCTTACCAGGAATTACTCGAAAGAGCATAATTGATCTTGCACGTAGCATGGGATTCCAGGTTGAAGAGCGTCAAGTGGGCGTTGACGAATTGCTTGAAGCCGATGAAGTCTTTTGTACGGGAACAGCTGTGGTTATCTCACCTGTCGGCAGCATTACTTACCTTGGCAAAAAGGTGTCTTATGGAGACGGGGTTGGGGTCGTTTCACAACAACTCTATTCAGTGCTTACGAGACTACAAATGGGTCTTATTGAAGACAATAAGAATTGGACTGTGGAACTGAGGTAA 1269 44.21 MESRAAIPGLKPNSLLCPSPSRHSSTLFHFYSSSPSLFDSAISSAASSLKIQSQKQIQFGSHNVRQALPHLRSLPSLSDTYSETLESAHIEWDNLGFGLLPTDYMYSMKCTRDGTFSGGELQRFGNIEISPGAGVLNYGQGLFEGLKAYKTKDGRVLLFRPEENALRMRMGAERMCMPSPTVDQFLEAVNATVLANKRWIPPPGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIFVSPVGNYFKEGVAPINLIVENELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVNKTSLEEVSSCNIFVVKGNVISTPEIKGTILPGITRKSIIDLARSMGFQVEERQVGVDELLEADEVFCTGTAVVISPVGSITYLGKKVSYGDGVGVVSQQLYSVLTRLQMGLIEDNKNWTVELR 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 953229 957183 - Conep12aG0019000.1 Cone12ag0187 449031

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0187 422 PANTHER AMINO ACID AMINOTRANSFERASE 77 421 IPR005786 GO:0004084(PANTHER)|GO:0004084(InterPro)|GO:0009081(InterPro)|GO:0009507(PANTHER)
Cone12ag0187 422 FunFam Branched-chain-amino-acid aminotransferase 250 421 - -
Cone12ag0187 422 NCBIfam branched-chain-amino-acid transaminase 119 421 IPR005786 GO:0004084(InterPro)|GO:0009081(InterPro)
Cone12ag0187 422 Gene3D - 248 404 IPR043132 -
Cone12ag0187 422 FunFam Branched-chain-amino-acid aminotransferase 72 248 - -
Cone12ag0187 422 Pfam Amino-transferase class IV 141 379 IPR001544 GO:0003824(InterPro)
Cone12ag0187 422 Gene3D - 72 247 IPR043131 -
Cone12ag0187 422 CDD BCAT_beta_family 128 409 IPR033939 GO:0004084(InterPro)|GO:0009081(InterPro)
Cone12ag0187 422 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 85 418 IPR036038 GO:0003824(InterPro)
Cone12ag0187 422 PIRSF BCAT1 72 422 IPR005786 GO:0004084(InterPro)|GO:0009081(InterPro)
Cone12ag0187 422 ProSitePatterns Aminotransferases class-IV signature. 305 334 IPR018300 GO:0003824(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0187 K00826 - - gmx:100798328 624.394
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0187 Cone-Chr12:953229 Cone17ag0909 Cone-Chr17:7167594 4.41E-169 wgd
Cone12ag0187 Cone-Chr12:953229 Cone20ag0253 Cone-Chr20:1128077 1.10E-110 wgd
Cone12ag0187 Cone-Chr12:953229 Cone6ag1482 Cone-Chr6:11775483 1.53E-209 wgd
Cone12ag0187 Cone-Chr12:953229 Cone8ag0180 Cone-Chr8:941540 2.32E-281 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g593 . . . . . . . . Cmo05g00119 . . . . Car12g00561 . . . Bhi04g00472 . . . . . . . . . . . . . Cone6ag1482 . Cone8ag0180 Cone12ag0187 . . . . . . . . . . . . . . . . Cma05g00115 . . Cpe11g00101 . . . . . . . . . . . . . . . . Csa02g01862 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007669 1 1 1 1 2 1 2 1 1 0 0 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 1 0 36