Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0188 ATGGGTCTTGATGATGTTTGTAGCACAGGCCTTGTTCTAGGCTTAGGATCATCCTTCCCATGTAGTAGTATAAAGCCAAAGAAACAGTGCTTATCTTTTGAGCCATCTTTGGCTTTGGGCCTTGGAGTAAATAATATTATTGACATGAACAAAGGCGGTTATAGTAGTGATCACGGGCAGGTCGGGTCGAGTCACAGTACTCATAGCCAAAGCGGTGTCTCTAACTCTTTCTCCAGCGGCGGCGGGGACGGCAGCGGTGGGGGTAATAATAGGGTGGTTAAGAGAGAGAGAGAGCTTAGTAGTGAAGAGATTGAATTGGAAGAGAAAGTGATTTCTTCAAGAGTTGTAATAAGTGATATTGAAGATGAAGATGGTTCTACTAATGCTAGAAAGAAACTTAGGCTTACTAAAGATCAGTCTGCTCTGTTAGAAGAAAGCTTCAAGCTACATAGCACTCTCAACCCTCAGAAGCAAAAGCAAGCACTAGCGATACAGCTGAATCTAAGGCCAAGACAAGTTGAAGTGTGGTTTCAAAATAGGAGAGCCAGGACTAAGTTGAAGCAAACAGAGGTGGATTGTGACCTGTTGAAGAAGTGCTGTGAAAATCTAACTAATGAGAATAGAATATTACAAAAAGAGGTTCAAGAATTGAAGGCCCTAACACTTGCTCAACCACCATTCTTGATGCATATGCCTGCAGCTACTCTCACCATGTGCCCTTCTTGCGAGAAGATAGATCATGGTTCAAAACCACCACCGCCCAAGACGACACCGTTTTCTATGGCTCCTAATAATAAGCTGCCTCACCATCACTTGTACATTAATCCCTTCACAAACCCTTCTGCTGCCTGTTAA 855 43.27 MGLDDVCSTGLVLGLGSSFPCSSIKPKKQCLSFEPSLALGLGVNNIIDMNKGGYSSDHGQVGSSHSTHSQSGVSNSFSSGGGDGSGGGNNRVVKRERELSSEEIELEEKVISSRVVISDIEDEDGSTNARKKLRLTKDQSALLEESFKLHSTLNPQKQKQALAIQLNLRPRQVEVWFQNRRARTKLKQTEVDCDLLKKCCENLTNENRILQKEVQELKALTLAQPPFLMHMPAATLTMCPSCEKIDHGSKPPPPKTTPFSMAPNNKLPHHHLYINPFTNPSAAC 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 964039 965362 + Conep12aG0019100.1 Cone12ag0188 449032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0188 284 MobiDBLite consensus disorder prediction 56 85 - -
Cone12ag0188 284 Gene3D - 123 192 - -
Cone12ag0188 284 ProSiteProfiles 'Homeobox' domain profile. 126 187 IPR001356 GO:0003677(InterPro)
Cone12ag0188 284 SMART halz 187 230 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone12ag0188 284 Pfam Homeodomain 130 185 IPR001356 GO:0003677(InterPro)
Cone12ag0188 284 MobiDBLite consensus disorder prediction 245 264 - -
Cone12ag0188 284 SUPERFAMILY Homeodomain-like 122 188 IPR009057 -
Cone12ag0188 284 ProSitePatterns 'Homeobox' domain signature. 162 185 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone12ag0188 284 SMART HOX_1 128 191 IPR001356 GO:0003677(InterPro)
Cone12ag0188 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 48 261 IPR050762 -
Cone12ag0188 284 Coils Coil 186 220 - -
Cone12ag0188 284 MobiDBLite consensus disorder prediction 54 91 - -
Cone12ag0188 284 Pfam Homeobox associated leucine zipper 187 220 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone12ag0188 284 CDD homeodomain 130 188 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0188 Cone-Chr12:964039 Cone13ag0523 Cone-Chr13:5522121 1.03E-51 dispersed
Cone12ag0188 Cone-Chr12:964039 Cone4ag1641 Cone-Chr4:12388560 2.81E-47 wgd
Cone12ag0188 Cone-Chr12:964039 Cone6ag1484 Cone-Chr6:11792840 2.32E-74 wgd
Cone12ag0188 Cone-Chr12:964039 Cone7ag1311 Cone-Chr7:9619411 7.59E-45 wgd
Cone12ag0188 Cone-Chr12:964039 Cone8ag0182 Cone-Chr8:956996 2.35E-154 wgd
Cone12ag0188 Cone-Chr12:964039 Cone9ag1406 Cone-Chr9:10475756 1.45E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44425 PF00067 p450 7.40E-99 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0188 K09338 - rcu:8267677 265.774