Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone12ag0188 | ATGGGTCTTGATGATGTTTGTAGCACAGGCCTTGTTCTAGGCTTAGGATCATCCTTCCCATGTAGTAGTATAAAGCCAAAGAAACAGTGCTTATCTTTTGAGCCATCTTTGGCTTTGGGCCTTGGAGTAAATAATATTATTGACATGAACAAAGGCGGTTATAGTAGTGATCACGGGCAGGTCGGGTCGAGTCACAGTACTCATAGCCAAAGCGGTGTCTCTAACTCTTTCTCCAGCGGCGGCGGGGACGGCAGCGGTGGGGGTAATAATAGGGTGGTTAAGAGAGAGAGAGAGCTTAGTAGTGAAGAGATTGAATTGGAAGAGAAAGTGATTTCTTCAAGAGTTGTAATAAGTGATATTGAAGATGAAGATGGTTCTACTAATGCTAGAAAGAAACTTAGGCTTACTAAAGATCAGTCTGCTCTGTTAGAAGAAAGCTTCAAGCTACATAGCACTCTCAACCCTCAGAAGCAAAAGCAAGCACTAGCGATACAGCTGAATCTAAGGCCAAGACAAGTTGAAGTGTGGTTTCAAAATAGGAGAGCCAGGACTAAGTTGAAGCAAACAGAGGTGGATTGTGACCTGTTGAAGAAGTGCTGTGAAAATCTAACTAATGAGAATAGAATATTACAAAAAGAGGTTCAAGAATTGAAGGCCCTAACACTTGCTCAACCACCATTCTTGATGCATATGCCTGCAGCTACTCTCACCATGTGCCCTTCTTGCGAGAAGATAGATCATGGTTCAAAACCACCACCGCCCAAGACGACACCGTTTTCTATGGCTCCTAATAATAAGCTGCCTCACCATCACTTGTACATTAATCCCTTCACAAACCCTTCTGCTGCCTGTTAA | 855 | 43.27 | MGLDDVCSTGLVLGLGSSFPCSSIKPKKQCLSFEPSLALGLGVNNIIDMNKGGYSSDHGQVGSSHSTHSQSGVSNSFSSGGGDGSGGGNNRVVKRERELSSEEIELEEKVISSRVVISDIEDEDGSTNARKKLRLTKDQSALLEESFKLHSTLNPQKQKQALAIQLNLRPRQVEVWFQNRRARTKLKQTEVDCDLLKKCCENLTNENRILQKEVQELKALTLAQPPFLMHMPAATLTMCPSCEKIDHGSKPPPPKTTPFSMAPNNKLPHHHLYINPFTNPSAAC | 284 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 964039 | 965362 | + | Conep12aG0019100.1 | Cone12ag0188 | 449032 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone12ag0188 | 284 | MobiDBLite | consensus disorder prediction | 56 | 85 | - | - | |
Cone12ag0188 | 284 | Gene3D | - | 123 | 192 | - | - | |
Cone12ag0188 | 284 | ProSiteProfiles | 'Homeobox' domain profile. | 126 | 187 | IPR001356 | GO:0003677(InterPro) | |
Cone12ag0188 | 284 | SMART | halz | 187 | 230 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone12ag0188 | 284 | Pfam | Homeodomain | 130 | 185 | IPR001356 | GO:0003677(InterPro) | |
Cone12ag0188 | 284 | MobiDBLite | consensus disorder prediction | 245 | 264 | - | - | |
Cone12ag0188 | 284 | SUPERFAMILY | Homeodomain-like | 122 | 188 | IPR009057 | - | |
Cone12ag0188 | 284 | ProSitePatterns | 'Homeobox' domain signature. | 162 | 185 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cone12ag0188 | 284 | SMART | HOX_1 | 128 | 191 | IPR001356 | GO:0003677(InterPro) | |
Cone12ag0188 | 284 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 48 | 261 | IPR050762 | - | |
Cone12ag0188 | 284 | Coils | Coil | 186 | 220 | - | - | |
Cone12ag0188 | 284 | MobiDBLite | consensus disorder prediction | 54 | 91 | - | - | |
Cone12ag0188 | 284 | Pfam | Homeobox associated leucine zipper | 187 | 220 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone12ag0188 | 284 | CDD | homeodomain | 130 | 188 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag0188 | Cone-Chr12:964039 | Cone13ag0523 | Cone-Chr13:5522121 | 1.03E-51 | dispersed | |
Cone12ag0188 | Cone-Chr12:964039 | Cone4ag1641 | Cone-Chr4:12388560 | 2.81E-47 | wgd | |
Cone12ag0188 | Cone-Chr12:964039 | Cone6ag1484 | Cone-Chr6:11792840 | 2.32E-74 | wgd | |
Cone12ag0188 | Cone-Chr12:964039 | Cone7ag1311 | Cone-Chr7:9619411 | 7.59E-45 | wgd | |
Cone12ag0188 | Cone-Chr12:964039 | Cone8ag0182 | Cone-Chr8:956996 | 2.35E-154 | wgd | |
Cone12ag0188 | Cone-Chr12:964039 | Cone9ag1406 | Cone-Chr9:10475756 | 1.45E-74 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44425 | PF00067 | p450 | 7.40E-99 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone12ag0188 | K09338 | - | rcu:8267677 | 265.774 |