Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0193 ATGATACCTCTTAAACTATGCTGCTCCATCTTCTTCTTCTTCGTCTTCTTCCTGCAGATTTTTGTTCTAGGACTATCTATTGGATCAGATTTTGATATCCTAATTCGGGTCAAGAATCATTATATAGACGATCCGGATAATACTCTCAAGGATTGGGTTCGAAATGGAGATCAGAACCCATGTAATTGGACTGGAATTACATGTGATAATAAGAATCACTCGGTTACTGCAATTGATCTTTCCGGTTTGGGAATTTCCGGTACGCTTCCGTTCGACTTTTGCCGGATTCGGACCCTCAAAAACCTCTCTCTACAAAGCAATAACATAGAGGGCAGCGTTTCATCCAATGCTCTGTCTCTCTGCTCTCGCCTTCAATTACTCAACCTCTCTACCAACGACATCGTCGGAAACTTGCCGGAGTTCACGCTGGAGTTCACTGACTTACGAGTGCTCGATCTTTCTTACAACAACTTCTCCGGCGCGATTCCGGCGAGTTTCGGCTGGTTACCGAGTCTGCAAGTGCTTAATCTTATCCAGAATTTGCTCAACGAGTCGATTCCTTCTTTCTTAGGTAATCTCACTGAGTTGATTCGGCTTGAACTCGCATATAATCCATTTGAGCCAAGTATTTTACCGCCAGAATTCGGAAATCTATCTAAGCTCGAGAATCTATATCTAACATCTACAAATCTAATCGGAACTATACCGGACTCGATCGGAAAGCTTATCTCACTCAAAAATCTCGATCTATGTACTAATTCTCTATCAGGTAAGATTCCTATTACGATTGGTGAATTGAGAAATGTGGAACAAATGGTGCTATTTGAGAATCAATTTTACGGTGAATTGCCTGAAAGCATCGGTAATTTGACGAATCTGCTTCAACTCGATGTTTCTCAAAACAATCTTAGAGGAAAATTACCAGAAAATGTTGCAGCATTGCATCTAGAATCTCTGAATCTGAATGATAATCTATTTGAAGGTGAAGTTCCAGAAATCTTAGCTTCGAATCCTAATCTAGTTGAATTGAAGCTTTTCAACAACAGCTTTACAGGAAGATTACCTAAATATTTAGGTCAAAATTCAGACTTGACGGATTTTGATATTTCGACGAACAATTTCAATGGTGAATTGCCGAAATACCTTTGTCATAGGAAGAAACTTGAAAGACTGATCAGTTTCGGCAGTGGGTTCTCTGGAAAATTGCCGGAGTCGCTTGGCGAGTGCGATTCTCTCAGCTATGTAAGAATCGAGAACAATCGATTCTCTGGTGAAGTGCCAAACGGTTTCTGGAGCCTTCCTCTGCTTGAACACTTCCAATTGAGTAATAACGCTTTTGAAGGCTCTATTCCTACTTCGATCCCCGCTGCTCGTGGAATTACAGACTTTCTGATCTCCGGCAACAACTTCTCCGGCCCATTGCCAGCTGAAATCTGCAGATTGCACGAGGTCGTCAGATTTGAAGGGAGCAGAAACAAATTCTCCGGCGAACTCCCTTCTTGTATCACTAACTTGAAGAAATTACAAAACCTCGAACTGCAAGAGAATACGTTTTCCGGCGACATTCCGAGGACAGTTAGATCATGGATTGTGTTAACCGCATTAAATCTCTCCGGTAACAGATTCTCCGGTCAGATTCCGCCTCGGCTCGGAGATTTACCGGCCTTGACGCATCTAGATCTTTCTAGGAACCTTCTCTCCGGCAAAATTCCTCCGGAACTGACGAAGTTGAAGCTTGATGAATTCAATTTATCAGATAACGAACTGTATGGAAAGATTCCTTCAGGCTTTGATCGAGAACGGTTTGTTTCAAGTCTAATGGGTAACCCGAATCTATGCAGTCCGGATCTTAAACCGATCCGCCTATGCCCAGCATCCAAACGTGCTACCTCGAACTTTGTGGTTATAGTTTTAGCCGTTTGTGTTCTACTACTAATCGGGTCTCTCTTATGGTTCATACGGGCCAAGTGGCATTTATCTCCTTTGAAACGAAAGAGCGCATGGAAAGTAACCCAGTTTCAACGGGTCGGGTTCAATGAGAAAGACATGATCCCACAGTTAACAAATGCGAACTTGATCGGATCCGGTGGGTCGGGTAGTGTCTATAAAGTTCAGCTCCGGACAGGTGATGTAGTTGCTGCGAAAAGACTTTGGGTGGGTCAACGCGAAATGGAAAGTGAGTCAGTTTTTCGATCTGAGGTCGAGACACTGGGTCGGATTCGGCATAGCAATGTTATAAAATTGTTATTCAGTTGTAGCGGCCCCAAAGGAGGTAGAATTTTGGTATACGAGTATATGGAGAATGGGAGCTTAGGGGATGTGTTGCATGGGGAGAAAAGCGAGGAAGTGTTGGACTGGGAGAGGAGGTTGAATATTGCGGTGGGTGCAGCTCAGGGGTTGGCATATCTTCATCACGATTGCATTCCAACTATAGTGCATCGAGATGTGAAGAGTAATAACATTTTGTTGGACGGTGAGTTTGTTCCCCGTGTGGCCGATTTCGGGTTGGCTAAGACGTTGCAGCGTGAGGCTAGCGATGGCGGGAACATGTCCTGTGTTGCCGGGTCTTATGGTTACATTGCGCCTGAGTACGGTTATACAATGAAGGTGACCGAGAAGAGTGATGTTTATAGTTTTGGGGTATTGTTGATGGAATTGGTTACGGGTAAGAGGCCGAATGATTTCTCATTTGGTGAGGAGAAAGATATTGTGAAGTGGGTTAAAGATCTTACTTTATCATCGTCCTCATGTGAAGAAAGAAGTGGAATAAAAGAAGTTTCAAGCCATCTAATTGACCCTAGAATGGAGCCGTTATCGCCTTGTGATCTTGCAACGATAGAGAAAGTTTTGGATGTGGCCTTGCTTTGCACATCACCATTGCCAGTCGATAGGCCCACCATGAGACGAGTTGTCGAGTTGCTTAACCCGAAATTGAACTGGGCGACGTCACAATCTAGTGGGTGTCATTAG 2970 43.7 MIPLKLCCSIFFFFVFFLQIFVLGLSIGSDFDILIRVKNHYIDDPDNTLKDWVRNGDQNPCNWTGITCDNKNHSVTAIDLSGLGISGTLPFDFCRIRTLKNLSLQSNNIEGSVSSNALSLCSRLQLLNLSTNDIVGNLPEFTLEFTDLRVLDLSYNNFSGAIPASFGWLPSLQVLNLIQNLLNESIPSFLGNLTELIRLELAYNPFEPSILPPEFGNLSKLENLYLTSTNLIGTIPDSIGKLISLKNLDLCTNSLSGKIPITIGELRNVEQMVLFENQFYGELPESIGNLTNLLQLDVSQNNLRGKLPENVAALHLESLNLNDNLFEGEVPEILASNPNLVELKLFNNSFTGRLPKYLGQNSDLTDFDISTNNFNGELPKYLCHRKKLERLISFGSGFSGKLPESLGECDSLSYVRIENNRFSGEVPNGFWSLPLLEHFQLSNNAFEGSIPTSIPAARGITDFLISGNNFSGPLPAEICRLHEVVRFEGSRNKFSGELPSCITNLKKLQNLELQENTFSGDIPRTVRSWIVLTALNLSGNRFSGQIPPRLGDLPALTHLDLSRNLLSGKIPPELTKLKLDEFNLSDNELYGKIPSGFDRERFVSSLMGNPNLCSPDLKPIRLCPASKRATSNFVVIVLAVCVLLLIGSLLWFIRAKWHLSPLKRKSAWKVTQFQRVGFNEKDMIPQLTNANLIGSGGSGSVYKVQLRTGDVVAAKRLWVGQREMESESVFRSEVETLGRIRHSNVIKLLFSCSGPKGGRILVYEYMENGSLGDVLHGEKSEEVLDWERRLNIAVGAAQGLAYLHHDCIPTIVHRDVKSNNILLDGEFVPRVADFGLAKTLQREASDGGNMSCVAGSYGYIAPEYGYTMKVTEKSDVYSFGVLLMELVTGKRPNDFSFGEEKDIVKWVKDLTLSSSSCEERSGIKEVSSHLIDPRMEPLSPCDLATIEKVLDVALLCTSPLPVDRPTMRRVVELLNPKLNWATSQSSGCH 989
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 979107 982680 - Conep12aG0019600.1 Cone12ag0193 449037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0193 989 FunFam Leucine-rich repeat receptor-like kinase 29 146 - -
Cone12ag0193 989 SUPERFAMILY RNI-like 211 578 - -
Cone12ag0193 989 ProSiteProfiles Protein kinase domain profile. 687 978 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0193 989 SMART serkin_6 687 978 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0193 989 Gene3D Ribonuclease Inhibitor 27 209 IPR032675 -
Cone12ag0193 989 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 147 211 - -
Cone12ag0193 989 Gene3D Transferase(Phosphotransferase) domain 1 766 985 - -
Cone12ag0193 989 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 386 974 IPR051716 -
Cone12ag0193 989 Gene3D Ribonuclease Inhibitor 314 631 IPR032675 -
Cone12ag0193 989 SUPERFAMILY Protein kinase-like (PK-like) 683 974 IPR011009 -
Cone12ag0193 989 Pfam Leucine rich repeat 148 205 IPR001611 GO:0005515(InterPro)
Cone12ag0193 989 FunFam Leucine-rich repeat receptor-like protein kinase 766 987 - -
Cone12ag0193 989 Gene3D Phosphorylase Kinase; domain 1 661 765 - -
Cone12ag0193 989 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag0193 989 ProSitePatterns Protein kinases ATP-binding region signature. 693 715 IPR017441 GO:0005524(InterPro)
Cone12ag0193 989 Gene3D Ribonuclease Inhibitor 210 313 IPR032675 -
Cone12ag0193 989 FunFam Leucine-rich receptor-like protein kinase family protein 212 309 - -
Cone12ag0193 989 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Cone12ag0193 989 Pfam Protein kinase domain 690 900 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0193 989 Pfam Leucine Rich Repeat 220 242 IPR001611 GO:0005515(InterPro)
Cone12ag0193 989 Pfam Leucine Rich Repeat 244 266 IPR001611 GO:0005515(InterPro)
Cone12ag0193 989 Pfam Leucine Rich Repeat 315 335 IPR001611 GO:0005515(InterPro)
Cone12ag0193 989 Pfam Leucine Rich Repeat 556 577 IPR001611 GO:0005515(InterPro)
Cone12ag0193 989 Pfam Leucine Rich Repeat 532 553 IPR001611 GO:0005515(InterPro)
Cone12ag0193 989 FunFam Receptor-like protein kinase HSL1 315 620 - -
Cone12ag0193 989 SMART LRR_typ_2 169 193 IPR003591 -
Cone12ag0193 989 SMART LRR_typ_2 145 168 IPR003591 -
Cone12ag0193 989 SMART LRR_typ_2 290 314 IPR003591 -
Cone12ag0193 989 SMART LRR_typ_2 218 242 IPR003591 -
Cone12ag0193 989 SMART LRR_typ_2 433 457 IPR003591 -
Cone12ag0193 989 SMART LRR_typ_2 553 577 IPR003591 -
Cone12ag0193 989 SUPERFAMILY L domain-like 72 284 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0193 Cone-Chr12:979107 Cone6ag0989 Cone-Chr6:5425703 2.03E-91 dispersed
Cone12ag0193 Cone-Chr12:979107 Cone6ag1492 Cone-Chr6:11817691 1.37E-188 wgd
Cone12ag0193 Cone-Chr12:979107 Cone8ag0188 Cone-Chr8:982485 1.03E-267 wgd
Cone12ag0193 Cone-Chr12:979107 Cone9ag1416 Cone-Chr9:10501865 1.13E-143 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81939 PF01566 Nramp 9.00E-121 CL0062 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0193 - - - 0.0