Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0205 ATGCTAATTCATTATAGTCTCTTCCTCTTTCTGCTTCCCTTTGTTGTTTCAATTCAATTTCAACTAACAAGCTTTGACGCAAACAAACCAGACATACTCTACCAAGGGGATGCTGTGCCTTCAGTTGGAGCAATCCAATTCAACAAAGTCAATTACCTCAATCGGGTAGGATGGGCCACATACGCCGAGCAAGTCCCACTGTGGGACCGGAATACCGGAAAACTCACTGACTTCACGACCAACTTTATCTTCACCATTGATACACAAGGTGCCTCGGCCATGAAGTACGGCCATGGGATTGTTTTCTTTCTAGCTCCTGTTGGTTTTCAAATCCCGCCAAACTCAGCCGGAGGGTTTTTGGGCTTATTCAACACCTCAACTAGTGATTCATCTCGAAACCAAATCGTCACCGTCGAGTTCGACTCGTTCCCTAATGAGGAATGGGACCCCCCAGTTGAGCATGTGGGGATTAACAACAATTCACTTACTTCCGCAGTTTATACTAGATGGAATGCGAGCTTACATAGTGACGATAGGACTAATGTGTTGATCTCTTACAATTCAAGTACCCAGAATTTGAGTGTTTCTTGGAGGTACGAAACAACCTCGAATTCATTTGAGAATACTAGTCTGTCTTTCCAGATTGATCTGAAGCAAGTTCTGCCGAATTGGGTGACTATAGGGTTTTCAGCTGCTACAGGTTCATATGCAGAGAAACACACACTTGAATCCTGGGAATTCAGCTCAAGCTTGGAGGTGAAGGAAACAAGTACTGGAAATAATTCGAAGAAAGTGAGGATAATACTGGGAATAACTGTTCCATTGGGTGGATTGATGATACTGGGCTCATTGATAGCATGTATTTTGTCATGGAGATGGAAGAAAAAGATCAGATCAGTAAAAGCGGATGTGGCAAACTTGACTTCCATTAATAATGATGATCTGGAAAGAGGGGCAGGTCCTAGAAGATTTTCACGTCAGGATCTTTCCTTGGCAACAAACAACTTTTCAAAAGACAGAAAACTAGGTCAAGGAGGATTTGGTGCAGTCTATAGAGGATACTTAGCTGATATAGATCAAACTGTTGCTGTGAAGAAAATCTCAAGAGGATCCAGACAAGGTAAAAAAGAATACATAACCGAAGTGAAGATCATTAGTCTGTTGAGGCACCGGAATTTGGTTCAACTCATAGGCTGGTGTCATGATAAAGGTGAATTCTTGCTAGTGTACGAGTTTATGCCGAATGGTAGCCTTGATGCTCACCTCTTTGGAAAGAAAAGTCCACTTCCATGGGATGTTAGGCACAAGGTAGCTTTAGGATTGGCTTCTGCACTGCTCTATCTTCATGAAGAGTGGGAGCAATGTGTCGTTCATCGTGATATAAAAGCGAGCAATGTCATGTTAGATTCCAATTTCAATGTCAAGCTTGGTGATTTTGGATTGGCCAGGCTCATGGACCATGAGTTAGGACCCCAAACAACTGGCCTAGCCGGAACATTAGGGTACCTAGCGCCGGAATATATAAGCACAGGTAGAGCCAGTAAAGAGTCAGATGTCTACAGCTTTGGAGTGGTTGCTTTGGAAATCGCCACCGGAAGAAGATCGATCGATCCAGTGGGAAGGGATTCTGATATGGGGTTGGTACAATGGATTTGGGATCTCTACGGAAAGGAAGAGCTTCTTTTGGCCATAGATAGTAAATTGAAGTCAAATTTTGATTCGAAACAGCTAGAGTGTTTGATGATTGTTGGGTTGTGGTGTACTTATCCAGATAGTAAAATGAGACCATCAATAAGGCAAGCAATTCATGTTCTTAATTTTGACGCGACCATGCCAGATTTGCCGAAAACGATACCGGTTCCTGTCTATCATGTTCTTTCGCCATCAGTGAGTTCCAATGATCCTACCGTTAGTACTACAAGCCTACAAACGGGTCGTTAA 1941 42.97 MLIHYSLFLFLLPFVVSIQFQLTSFDANKPDILYQGDAVPSVGAIQFNKVNYLNRVGWATYAEQVPLWDRNTGKLTDFTTNFIFTIDTQGASAMKYGHGIVFFLAPVGFQIPPNSAGGFLGLFNTSTSDSSRNQIVTVEFDSFPNEEWDPPVEHVGINNNSLTSAVYTRWNASLHSDDRTNVLISYNSSTQNLSVSWRYETTSNSFENTSLSFQIDLKQVLPNWVTIGFSAATGSYAEKHTLESWEFSSSLEVKETSTGNNSKKVRIILGITVPLGGLMILGSLIACILSWRWKKKIRSVKADVANLTSINNDDLERGAGPRRFSRQDLSLATNNFSKDRKLGQGGFGAVYRGYLADIDQTVAVKKISRGSRQGKKEYITEVKIISLLRHRNLVQLIGWCHDKGEFLLVYEFMPNGSLDAHLFGKKSPLPWDVRHKVALGLASALLYLHEEWEQCVVHRDIKASNVMLDSNFNVKLGDFGLARLMDHELGPQTTGLAGTLGYLAPEYISTGRASKESDVYSFGVVALEIATGRRSIDPVGRDSDMGLVQWIWDLYGKEELLLAIDSKLKSNFDSKQLECLMIVGLWCTYPDSKMRPSIRQAIHVLNFDATMPDLPKTIPVPVYHVLSPSVSSNDPTVSTTSLQTGR 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1045788 1047728 + Conep12aG0020800.1 Cone12ag0205 449049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0205 646 Pfam Legume lectin domain 18 260 IPR001220 GO:0030246(InterPro)
Cone12ag0205 646 FunFam L-type lectin-domain containing receptor kinase IX.1 321 412 - -
Cone12ag0205 646 FunFam L-type lectin-domain containing receptor kinase IX.1 16 260 - -
Cone12ag0205 646 Gene3D Phosphorylase Kinase; domain 1 321 412 - -
Cone12ag0205 646 CDD STKc_IRAK 342 606 - -
Cone12ag0205 646 FunFam Lectin-domain containing receptor kinase A4.3 413 625 - -
Cone12ag0205 646 SMART serkin_6 336 610 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0205 646 ProSitePatterns Protein kinases ATP-binding region signature. 342 366 IPR017441 GO:0005524(InterPro)
Cone12ag0205 646 Gene3D Transferase(Phosphotransferase) domain 1 413 627 - -
Cone12ag0205 646 CDD lectin_legume_LecRK_Arcelin_ConA 18 251 IPR001220 GO:0030246(InterPro)
Cone12ag0205 646 ProSitePatterns Legume lectins beta-chain signature. 136 142 IPR019825 -
Cone12ag0205 646 Pfam Protein kinase domain 337 603 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0205 646 PANTHER - 45 615 IPR050528 GO:0005886(PANTHER)
Cone12ag0205 646 SUPERFAMILY Protein kinase-like (PK-like) 320 632 IPR011009 -
Cone12ag0205 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag0205 646 ProSiteProfiles Protein kinase domain profile. 336 614 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0205 646 SUPERFAMILY Concanavalin A-like lectins/glucanases 16 257 IPR013320 -
Cone12ag0205 646 Gene3D - 16 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0205 Cone-Chr12:1045788 Cone9ag1435 Cone-Chr9:10668309 6.85E-287 dispersed
Cone12ag0205 Cone-Chr12:1045788 Cone6ag1511 Cone-Chr6:11942173 1.29E-257 wgd
Cone12ag0205 Cone-Chr12:1045788 Cone9ag1434 Cone-Chr9:10665161 3.69E-255 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81940 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0205 - - - 0.0