Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0206 ATGGCAAATCCAGCAGAGCAAGAGCACCCCAGGAAGGCGTTTGGATGGGCAGCTAGAGACCCATCTGGGTTCCTCTCTCCCTTCAACTTCTCCAGAAGGGAAACGGGTGAGAAAGACGTAAGATTCAAAGTTCTATACTGTGGGGTATGCCATTCGGATCTTCACATGGTCAAGAACGAGTGGGGAATGACTACGTACCCTGTTGTACCTGGGCATGAGGCTGTGGGTATAGTAGAAGAAGTAGGGAGCAAAGTAGAAAATTTCAATGTTGGGGACAGAGTTGGAGTGGGATGTCATGTGGGATCTTGCCGTTCATGTGAGAATTGTACCAACAATCTTGAGAATTACTGTCCTGAAATGGTACTCACATATGGCAGTAAGTACCATGACGGAACCATCACATACGGCGGCTACTCGGACTCCATGGTGGTGGATGAACACTTCCTCATCCGCATACCGGAGAGCCTCCCGCTTGATGCCGGTGCTCCTCTTTTGTGTGCTGGGATCACAGTGTACAGCCCCTTAAGGTATTATGAACTCGATAAGCCGGGTTTGCATGTGGGCATTGTTGGGCTTGGTGGCTTAGGCCATGTGGCTGTCAAGTTTGCTAAGGCTTTTGGGGTTAAGGTTACAGTTATAAGCACTTCTCCTAACAAGAAGCAAGAGGCTTTAGAGCATCTTGGGGCTGACTCTTTTCTCATTAGCAGTGACCCAGACCAAATACAGGCGGCAGTAGGTACATTTGACGGCATTATCGACACCGTCTCGGCAGACCACCCGATATTGCCATTGTTTAGTCTATTGAAGTCGCATGGAAAACTCGTTATGGTCGGTGCACCGGAGAAGCCACTTGAGCTTCCGGTCTTTCCATTACTTACGGGGAGGAAAATGGTGGCCGGAAGTCAAACAGGAGGGATAAAGGAGACTCAAGAAATGATAGATTTTGCGGCGAAGCACAACATTACTGCCGATATTGAGGTTATTCCGATAGATTACGTGAACACTGCCATGAAGAGGCTCGCCAAAGCTGATGTTAAATACCGATTTGTCATTGACGTCGGGAACTCAGTGAAGTGTAGTTAG 1083 48.38 MANPAEQEHPRKAFGWAARDPSGFLSPFNFSRRETGEKDVRFKVLYCGVCHSDLHMVKNEWGMTTYPVVPGHEAVGIVEEVGSKVENFNVGDRVGVGCHVGSCRSCENCTNNLENYCPEMVLTYGSKYHDGTITYGGYSDSMVVDEHFLIRIPESLPLDAGAPLLCAGITVYSPLRYYELDKPGLHVGIVGLGGLGHVAVKFAKAFGVKVTVISTSPNKKQEALEHLGADSFLISSDPDQIQAAVGTFDGIIDTVSADHPILPLFSLLKSHGKLVMVGAPEKPLELPVFPLLTGRKMVAGSQTGGIKETQEMIDFAAKHNITADIEVIPIDYVNTAMKRLAKADVKYRFVIDVGNSVKCS 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1048994 1050958 - Conep12aG0020900.1 Cone12ag0206 449050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0206 360 FunFam Putative cinnamyl alcohol dehydrogenase 6 324 353 - -
Cone12ag0206 360 Gene3D - 167 323 - -
Cone12ag0206 360 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491(InterPro)
Cone12ag0206 360 Pfam Alcohol dehydrogenase GroES-like domain 37 154 IPR013154 -
Cone12ag0206 360 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
Cone12ag0206 360 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Cone12ag0206 360 Gene3D - 16 353 - -
Cone12ag0206 360 PANTHER ALDEHYDE REDUCTASE 6 356 IPR047109 GO:0009809(PANTHER)|GO:0016616(InterPro)|GO:0016616(PANTHER)|GO:0045551(PANTHER)
Cone12ag0206 360 SUPERFAMILY GroES-like 19 184 IPR011032 -
Cone12ag0206 360 FunFam Cinnamyl alcohol dehydrogenase 167 323 - -
Cone12ag0206 360 CDD CAD1 14 352 IPR047109 GO:0016616(InterPro)
Cone12ag0206 360 FunFam Uncharacterized protein 16 166 - -
Cone12ag0206 360 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 321 IPR036291 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0052 Cone-Chr12:301583 Cone12ag0206 Cone-Chr12:1048994 2.76E-185 dispersed
Cone12ag0206 Cone-Chr12:1048994 Cone8ag0057 Cone-Chr8:295123 2.77E-185 dispersed
Cone12ag0206 Cone-Chr12:1048994 Cone12ag0209 Cone-Chr12:1060437 1.28E-273 proximal
Cone6ag1215 Cone-Chr6:9505795 Cone12ag0206 Cone-Chr12:1048994 2.34E-25 transposed
Cone8ag0577 Cone-Chr8:4644864 Cone12ag0206 Cone-Chr12:1048994 1.59E-124 transposed
Cone12ag0206 Cone-Chr12:1048994 Cone6ag1514 Cone-Chr6:11963213 5.33E-38 wgd
Cone12ag0206 Cone-Chr12:1048994 Cone8ag0199 Cone-Chr8:1053508 1.35E-204 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0206 K23232 - gmx:100816901 585.874