Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0208 ATGGAGGTGTATTACTACAACAAAAACTTTCCAATCATGAAGGATCTGGCTGTGTTACGGCCAAGATATTCACTCAAGAAGAGCTCAAGAAAGCCACTGACAATTACGACGAAAGCAAAATCATCGGCATCGGAGGTTTCGGAACAGTTTTACAAAGGAGTTTTAGAAGATGGTCTTATAGTTGCAATCAAGAAGTCAAAAATAGTCGACAAATGTCAAACAGAGCAATTTGTCAACGAAGTCGTCGTTCTTTCCCAGATCAACCATAGAAATGTTGTTCGACTCTTAGGCTGTTGTCTAGAGACAGAAGTCCCGCTCCTAGTTTATGAATTTGTTACTAATGGGACCCTCTTCGACCACATTCATAACAAAAGCAAGTCTTCAAAACTTTCATGGGACACTCGTTTAAGAATAGCGGCCGAAACAGCTGAAGTATTATCATATCTACATGGTTCGGCTTCTATTCCCATAATTCATAGAGATGTTAAGACCACAAATGTGCTCTTAGATGATTCTTACGGGGCAAAAGTTTCGGATTTTGGTGCATCAAAATTAGTTCCGCTGGATCAAACACAATTATCTACTATGGCCTGA 594 39.73 MEVYYYNKNFPIMKDLAVLRPRYSLKKSSRKPLTITTKAKSSASEVSEQFYKGVLEDGLIVAIKKSKIVDKCQTEQFVNEVVVLSQINHRNVVRLLGCCLETEVPLLVYEFVTNGTLFDHIHNKSKSSKLSWDTRLRIAAETAEVLSYLHGSASIPIIHRDVKTTNVLLDDSYGAKVSDFGASKLVPLDQTQLSTMA 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1057438 1058031 + Conep12aG0021100.1 Cone12ag0208 449052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0208 197 Gene3D Transferase(Phosphotransferase) domain 1 112 197 - -
Cone12ag0208 197 FunFam Wall-associated receptor kinase-like 10 54 111 - -
Cone12ag0208 197 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag0208 197 SUPERFAMILY Protein kinase-like (PK-like) 51 192 IPR011009 -
Cone12ag0208 197 SMART serkin_6 44 196 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0208 197 Pfam Protein tyrosine and serine/threonine kinase 55 190 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag0208 197 Gene3D Phosphorylase Kinase; domain 1 27 111 - -
Cone12ag0208 197 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 48 196 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Cone12ag0208 197 ProSiteProfiles Protein kinase domain profile. 32 197 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0208 Cone-Chr12:1057438 Cone7ag1497 Cone-Chr7:10467632 2.57E-79 dispersed
Cone12ag0208 Cone-Chr12:1057438 Cone4ag1440 Cone-Chr4:11435233 8.14E-79 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81941 PF01459 Porin_3 1.60E-62 CL0193 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0208 - - - 0.0