Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0232 ATGTCGGTTAAGATGGGAAAACTGTTTCTTGCAGTTTTGTCATTGGCTTCCTTCTATTCTCTCGTGTTGTCTGATTATCAAGGAGATGCACTCTATTCATTCAGGTCTTCCCTTAATGCCACATCAAATCAACTCAATGATTGGAGCTATAGTCAAGTTAATCCATGTACTTGGTCCAATATTATCTGCACTGCAAATCTTGTGACTTCTATATCATTGACAAGTATGGGATTCACTGGAATCTTGTCTTCAAAAATTGGTGTTCTGAAAAATCTTACAACCCTAAATTTACAAGGAAATTACATTACCGGAGAGATACCAGATGCGTTTGGAAATCTGACAAGTTTGCAAAGCTTGGATTTGACAAATAACAGTTTAACAGGTCTAATACCACCTTCCCTCGGCAATCTGAAAAACCTTCAATTCCTGACTCTGAATCAAAATAATCTTAGTGGGACTATACCTGAATCACTTTCAAGTCTTCCAAGCTTGGTCAATCTTCTGCTCGATTCCAATAACCTCAGTGGTGAAATTCCGGAGCAGCTATTTCTACTTCCAAAATACAACTTCTCGGGAAACAAGCTGAATTGTGGGAGGATGAATACTCACCCGTGCACATCTGATAGTAAAACCTCAGATTCGTCAAGTAAGTCCAAGACAGGGATTATAGCCGGAATTGTTGGGGGGTTCACATTTACTATCTTTTTTGCTGTTTTCTTGTTTTTCTTGTTGAAGAGTAGACACAAAGGCTACAAACATGAAGTGTTTGAAGATGTTGCAGATGATCGGAGAATTGAGTTTGGTCAATTGAAAAGATTTGCATGGAGGGAATTACAAATAGCTACAGACAACTTCAGTGAGAAACATGTTCTAGGACAAGGAGGTTTTGGAAAGGTTTACAAAGGGGTTCTCTCAGATAACACGAAAGTTGCTGTGAAACGGTTAACTGATTATGAAAGCCCAGGAGGAGATGCTGCTTTCCATCGTGAAGTTGAGATGATAAGTGTAGCTGTTCACAAGAATCTACTACGATTAATTGGATTTTGCACAACTCCAACAGAGCGCCTCTTGGTCTATCCCTTTATGCAGAACCTGAGTGTTGCCTACCGTCTACGAGAGATTAAGCCTGGGGAACCTATTTTGGATTGGCCTACAAGAAAACAGGTGGCTCTAGGGACAGCACGTGGTTTAGAGTACCTTCATGAACATTGTAATCCTAAGATTATACATCGAGATGTCAAGGCTGCTAATGTCTTGCTTGATGAAGATTTTGAAGCAGTTGTAGGTGATTTTGGCTTGGCTAAGCTGGTAGATGTAAGGAAGACTAATGTGACAACCCAAGTTCGTGGAACAATGGGCCACATAGCACCTGAGTATCTATCCACTGGCAGGTCATCAGAAAGGACCGACGTTTTCGGTTATGGTATCATGCTTCTTGAACTTGTCACAGGTCAACGGGCCATCGACTTTTCACGTTTGGAGGAAGAAGATGAAGTCTTATTGCTTGACCATGTCAAGAAGCTTGAAAGGGAGAAACGACTAGATGATATAGTGGACAACAACTTGAACAAGAATTACTACATTCAAGAGGTGGAAATGCTTATCCAAGTTGCACTGCTCTGCACCCAGCCATCGCCTGAAGACCGCCCAGCTATGTCGGAAGTTGTACGCATGTTGGAAGGAGAAGGGCTTGCTGAGCGGTGGGAAGAATGGCAGCACGTGGAGGTTACGAGGAGGTTAGAGCATGAAAGATTGCAAAGAAGATTTGATTGGGGAGAAGATTCGGTTTATAACCAGAATGCTATTGAATTGTCCGGCGGAAGATGA 1827 41.82 MSVKMGKLFLAVLSLASFYSLVLSDYQGDALYSFRSSLNATSNQLNDWSYSQVNPCTWSNIICTANLVTSISLTSMGFTGILSSKIGVLKNLTTLNLQGNYITGEIPDAFGNLTSLQSLDLTNNSLTGLIPPSLGNLKNLQFLTLNQNNLSGTIPESLSSLPSLVNLLLDSNNLSGEIPEQLFLLPKYNFSGNKLNCGRMNTHPCTSDSKTSDSSSKSKTGIIAGIVGGFTFTIFFAVFLFFLLKSRHKGYKHEVFEDVADDRRIEFGQLKRFAWRELQIATDNFSEKHVLGQGGFGKVYKGVLSDNTKVAVKRLTDYESPGGDAAFHREVEMISVAVHKNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLREIKPGEPILDWPTRKQVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGRSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDEVLLLDHVKKLEREKRLDDIVDNNLNKNYYIQEVEMLIQVALLCTQPSPEDRPAMSEVVRMLEGEGLAERWEEWQHVEVTRRLEHERLQRRFDWGEDSVYNQNAIELSGGR 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1231244 1238565 + Conep12aG0023700.1 Cone12ag0232 449076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0232 608 FunFam Somatic embryogenesis receptor-like kinase 1 362 579 - -
Cone12ag0232 608 FunFam Somatic embryogenesis receptor kinase 1 255 361 - -
Cone12ag0232 608 Pfam Leucine Rich Repeat 91 113 IPR001611 GO:0005515(InterPro)
Cone12ag0232 608 ProSitePatterns Protein kinases ATP-binding region signature. 291 313 IPR017441 GO:0005524(InterPro)
Cone12ag0232 608 SUPERFAMILY Protein kinase-like (PK-like) 268 560 IPR011009 -
Cone12ag0232 608 ProSiteProfiles Protein kinase domain profile. 285 564 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0232 608 PRINTS Leucine-rich repeat signature 116 129 - -
Cone12ag0232 608 PRINTS Leucine-rich repeat signature 137 150 - -
Cone12ag0232 608 FunFam Putative LRR receptor-like serine/threonine-protein kinase 24 207 - -
Cone12ag0232 608 Pfam Protein tyrosine and serine/threonine kinase 288 559 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag0232 608 SMART LRR_typ_2 89 112 IPR003591 -
Cone12ag0232 608 SMART LRR_typ_2 161 185 IPR003591 -
Cone12ag0232 608 SMART LRR_typ_2 137 160 IPR003591 -
Cone12ag0232 608 SMART LRR_typ_2 113 136 IPR003591 -
Cone12ag0232 608 SUPERFAMILY L domain-like 27 196 - -
Cone12ag0232 608 Pfam Leucine rich repeat 115 174 IPR001611 GO:0005515(InterPro)
Cone12ag0232 608 SMART serkin_6 285 559 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0232 608 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Cone12ag0232 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 408 420 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag0232 608 Gene3D Transferase(Phosphotransferase) domain 1 362 579 - -
Cone12ag0232 608 Gene3D Ribonuclease Inhibitor 24 207 IPR032675 -
Cone12ag0232 608 Gene3D Phosphorylase Kinase; domain 1 256 361 - -
Cone12ag0232 608 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 608 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0232 Cone-Chr12:1231244 Cone7ag1426 Cone-Chr7:10133383 6.93E-161 dispersed
Cone6ag1226 Cone-Chr6:9656277 Cone12ag0232 Cone-Chr12:1231244 1.69E-209 transposed
Cone12ag0232 Cone-Chr12:1231244 Cone8ag0224 Cone-Chr8:1234321 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81943 PF00155 Aminotran_1_2 5.20E-100 CL0061 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0232 - - - 0.0