Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0238 ATGCTCGGGAACTGCACCAATGCAGTTGAGATCGATCTTTCGGAAAATCAGTTCAGTGGATCCATTCCGGCCGAGTTTGGTTGGATTGGAAATCTCCGTTTACTTCACCTTTTCGAGAATTTCCTCCAAGGAAGTATTCCTAGTGAGCTCGGAAAGTTGGAGCAGCTCCGAAATCTGGACCTTTCGATTAATAACTTGATCGGAACAATCCCTTTAGAATTTCAGAACCTTACATCCTTAAATGATCTTCAACTCTTTTATAATCATCTAGAGGGCACAATTCCTCCTCTTCTCGGGCTTTACAGTAACCTGTCTATTCTTGACATGTCAGCTAATCATCTTGTAGGCAGCATACCTCCTCATCTTTGCAAGAATCAGAAGCTGAATTTTCTAAGCCTGGGGTCGAATAAATTGTCGGGGAATATTCCGTTCGGCTTAAGAACTTGTAAATCCCTTGTGCATATAATGCTTGGAGACAATCAGCTTACAGGTAGTCTACCTTCTGAGTTATATGGACTTCATAATCTTTCCGCTCTCGAAGTGTATCAAAATCATTTTTCAGGGCCGGTTCCTCCTGAGGTAGGAAGGCTTAGAAACTTGGAACGGTTGCTTTTATCGGATAACCGTTTTGTTGGGAATATGCCTCCAGAGATTGGGAATCTTGTTCAACTCGTTGCATTCAATGTTTCCGGAAACCATCTGTCTGGAAGCATCCCTCGTGAGTTGGGGAATTGTGTAAACTTACAGAGGCTTGATCTTAGTAAGAACGACTTTACGGGCTACTTCCCGGAAGAAACCGGAAAGCTCGTGAATTTGGAACTCTTGAAGCTTTCTGATAACCGATTCATGGGAGGAATCCCGAGCACAATGGGGAATCTTGTTCGACTCACCGAGCTGCAAATGGGAGGGAATCTTTTTTCCAGTAGCATCCCTTTTGAGCTCGGTCAGTTGACTACTCTCCAGATTGCGCTCAACATTAGCCATAACAATCTTTCCGGAACAATTCCTGAGAATCTAGGAAACTTACAGATGTTGGAATCTCTGTACCTAAATGACAATCAGCTAATCGGAGAGATTCCAGATTCTATTGGTCAGCTTCTTAGTCTTCTTGTATGCAACCTCTCTAACAACAAACTGTCCGGGCCTGTCCCAAACACCCCTGTTTTTCAGAAAATGGATTCCTCAAATTTCATCGGAAACAACGGTTTGTGTCAAAAATCATCGAAGATTCCATCTCGTAATCCCAAACGAAGCTGGATAAAGCGGGTATCGTTACGAGAAAAACTAATAAGCATCATTTCTGCAGTGGTCGGGTTTATTTCTCTAACCTTCATAGTGGTTATTTGTCGGGCTATAAAGCGTGGTCCCAGCCCGAGTTTTGTTTCATTAGAGGATCAAACAAAGCCAGACATGATAGATAACTATTACTTTCCGAAAGAAGGTTTCACGTACCAGGATCTCTTGGAAGCTACTAGTAACTTCTCGGAGAGTGCAGTTGTGGGAAGAGGGGCATGTGGGACAGTGTACAAGGCAGTTATGGCGGATGGTGAGTTAGTTGCCGTCAAGAAGTTGAAATCCCAAGGCGGGGACAGAGTTGATAGTAGCTTTCTTGCTGAGATATCAACGCTCGGAAAAATCAGGCACCGGAACATTGTCAAGCTTAACGGGTTCTGTTACCATCAGGACTCAAACCTCTTGTTATATGAGTACATGGAAAATGGGAGCTTAGGAGAGCAGCTACATCAGAAGGAGGAAGTTCGTTTACGGGATTGGAATGCTCGATATAAGATTGCGCTTGGAGCGGCAGAGGGCTTGTGCTATCTCCATCATGATTGCAAGCCTCGGATCATTCACCGTGATATAAAGTCGAACAACATCTTGTTGGATGAAGTTTTGCAGGCACATGTCGGAGATTTTGGATTGGCAAAGTTGATTGACTTCCCATACTTATCGAAATCCATGTCAGCTGTAGCCGGTTCATATGGCTACATTGCCCCAGAATATGCTTATACAATGAAAGTGACGGAGAAATCTGATATCTACAGTTTCGGAGTGGTGTTATTGGAGCTGATAACGGGAAGGCCGCCCGTCCAACCTCAGGAACAGGGGGGTGACTTAGTCACTTGGGTAAGAAGATCAGTGCACAGCGGCTTGCCAGTTTCGGAATTATTCGACAAACGGGTTGAAGTAGACCCGAGTGCGAAAACAACAACAGTTGAGGAGATGTCATTGTTTCTCAAGATAGCATTGTTTTGCACAAGTACATCTCCGGTTAATCGGCCGACAATGAGGGAGGTGATTGCAATGATGATAGATGCTAAAGAGGCAGCGGCAGCAACAGCTGCGGCCAATTCTTCTTCTTCCTCCCCTAGATCAGAATGCCATTTAGATACTTGA 2397 44.31 MLGNCTNAVEIDLSENQFSGSIPAEFGWIGNLRLLHLFENFLQGSIPSELGKLEQLRNLDLSINNLIGTIPLEFQNLTSLNDLQLFYNHLEGTIPPLLGLYSNLSILDMSANHLVGSIPPHLCKNQKLNFLSLGSNKLSGNIPFGLRTCKSLVHIMLGDNQLTGSLPSELYGLHNLSALEVYQNHFSGPVPPEVGRLRNLERLLLSDNRFVGNMPPEIGNLVQLVAFNVSGNHLSGSIPRELGNCVNLQRLDLSKNDFTGYFPEETGKLVNLELLKLSDNRFMGGIPSTMGNLVRLTELQMGGNLFSSSIPFELGQLTTLQIALNISHNNLSGTIPENLGNLQMLESLYLNDNQLIGEIPDSIGQLLSLLVCNLSNNKLSGPVPNTPVFQKMDSSNFIGNNGLCQKSSKIPSRNPKRSWIKRVSLREKLISIISAVVGFISLTFIVVICRAIKRGPSPSFVSLEDQTKPDMIDNYYFPKEGFTYQDLLEATSNFSESAVVGRGACGTVYKAVMADGELVAVKKLKSQGGDRVDSSFLAEISTLGKIRHRNIVKLNGFCYHQDSNLLLYEYMENGSLGEQLHQKEEVRLRDWNARYKIALGAAEGLCYLHHDCKPRIIHRDIKSNNILLDEVLQAHVGDFGLAKLIDFPYLSKSMSAVAGSYGYIAPEYAYTMKVTEKSDIYSFGVVLLELITGRPPVQPQEQGGDLVTWVRRSVHSGLPVSELFDKRVEVDPSAKTTTVEEMSLFLKIALFCTSTSPVNRPTMREVIAMMIDAKEAAAATAAANSSSSSPRSECHLDT 798
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1273529 1278916 + Conep12aG0024300.1 Cone12ag0238 449082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0238 798 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 571 787 - -
Cone12ag0238 798 Gene3D Ribonuclease Inhibitor 287 411 IPR032675 -
Cone12ag0238 798 Gene3D Ribonuclease Inhibitor 1 92 IPR032675 -
Cone12ag0238 798 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 459 570 - -
Cone12ag0238 798 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 68 169 - -
Cone12ag0238 798 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 94 - -
Cone12ag0238 798 Pfam Protein kinase domain 496 767 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0238 798 SMART serkin_6 494 745 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0238 798 Gene3D Phosphorylase Kinase; domain 1 460 570 - -
Cone12ag0238 798 ProSiteProfiles Protein kinase domain profile. 494 746 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0238 798 Pfam Leucine Rich Repeat 103 124 IPR001611 GO:0005515(InterPro)
Cone12ag0238 798 Pfam Leucine Rich Repeat 199 221 IPR001611 GO:0005515(InterPro)
Cone12ag0238 798 Pfam Leucine Rich Repeat 55 77 IPR001611 GO:0005515(InterPro)
Cone12ag0238 798 Pfam Leucine Rich Repeat 247 269 IPR001611 GO:0005515(InterPro)
Cone12ag0238 798 Pfam Leucine Rich Repeat 345 366 IPR001611 GO:0005515(InterPro)
Cone12ag0238 798 Pfam Leucine Rich Repeat 271 293 IPR001611 GO:0005515(InterPro)
Cone12ag0238 798 Pfam Leucine Rich Repeat 10 27 IPR001611 GO:0005515(InterPro)
Cone12ag0238 798 Pfam Leucine Rich Repeat 324 342 IPR001611 GO:0005515(InterPro)
Cone12ag0238 798 Pfam Leucine Rich Repeat 224 245 IPR001611 GO:0005515(InterPro)
Cone12ag0238 798 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 101 414 - -
Cone12ag0238 798 SMART LRR_typ_2 53 76 IPR003591 -
Cone12ag0238 798 SMART LRR_typ_2 342 366 IPR003591 -
Cone12ag0238 798 SMART LRR_typ_2 197 221 IPR003591 -
Cone12ag0238 798 SMART LRR_typ_2 293 317 IPR003591 -
Cone12ag0238 798 SMART LRR_typ_2 102 125 IPR003591 -
Cone12ag0238 798 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag0238 798 SUPERFAMILY Protein kinase-like (PK-like) 472 770 IPR011009 -
Cone12ag0238 798 SUPERFAMILY L domain-like 285 384 - -
Cone12ag0238 798 Gene3D Transferase(Phosphotransferase) domain 1 571 792 - -
Cone12ag0238 798 SUPERFAMILY L domain-like 3 321 - -
Cone12ag0238 798 Gene3D Ribonuclease Inhibitor 190 286 IPR032675 -
Cone12ag0238 798 Gene3D Ribonuclease Inhibitor 93 189 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0238 Cone-Chr12:1273529 Cone14ag0207 Cone-Chr14:950468 1.20E-141 dispersed
Cone12ag0238 Cone-Chr12:1273529 Cone8ag0231 Cone-Chr8:1323930 1.32E-24 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81944 PF00722 Glyco_hydro_16 3.40E-59 CL0004 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0238 K27590 - mdm:103452955 1143.64