Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0240 ATGGCTTCCTCTCTCGCCTTTCCTCCTTCCTACTCCCTTTTTCTCTCTAATTTTCAATCTTCACCACATCCCATTCCCACCGGCTTTCCTCATTGTCTCCGACTCTGCCCTGCAAATTCAATGCCGTCCTCTTCTCACAGCGTCAGTCGAAACCTCAGTTTGGGCTTGAGCTCGAACTCATGTGTCGTAATGAAAGCTTCAACTTTGGACTTCTTCTCGGGTTCCTTCTTCGAAGGAGGAGTATTCGGGTCGGAGGAGGACACGCCGTCTCCTCCCGGATCGGGTCTGACCGCCCTCGAAGATAAGGAAGAGCCGGAATGCCCTCCCGGTCTCCGACAGTACGAGACTATGATGGTTCTCAGATCCGACATGTCGGAAGATGAGCGGCTCACCCTTACCCAGAAGTACGAGGAGTTACTTGTTGCCGGAGGGGGAATGTACATCGGGGTATTCAACCGAGGGGTTATTCCGTTGGCCTATGGCATCAAGACCAAAAACAAAGCCGGAGAATCCAATACCTATTTGGACGGAATCTACCTCCTCTTTACCTACTTCACCAAGCCCGAGTCCATTTCCGTTCTCGAAGCCACGCTTCAAGCAGATGATGATGTCATCAGATCATCTACTTTCAAGATGAGGAAGAGGAAAGTTGTTTAG 657 50.68 MASSLAFPPSYSLFLSNFQSSPHPIPTGFPHCLRLCPANSMPSSSHSVSRNLSLGLSSNSCVVMKASTLDFFSGSFFEGGVFGSEEDTPSPPGSGLTALEDKEEPECPPGLRQYETMMVLRSDMSEDERLTLTQKYEELLVAGGGMYIGVFNRGVIPLAYGIKTKNKAGESNTYLDGIYLLFTYFTKPESISVLEATLQADDDVIRSSTFKMRKRKVV 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1295881 1297270 + Conep12aG0024500.1 Cone12ag0240 449084

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0240 218 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 57 216 IPR000529 GO:0003735(PANTHER)|GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)|GO:0019843(InterPro)|GO:0070181(PANTHER)
Cone12ag0240 218 Gene3D - 110 217 IPR014717 -
Cone12ag0240 218 Pfam Ribosomal protein S6 113 211 IPR000529 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)|GO:0019843(InterPro)
Cone12ag0240 218 CDD bS6_chloro_cyano 111 212 - -
Cone12ag0240 218 Hamap Small ribosomal subunit protein bS6 [rpsF]. 111 214 IPR020814 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)|GO:0019843(InterPro)
Cone12ag0240 218 MobiDBLite consensus disorder prediction 83 108 - -
Cone12ag0240 218 SUPERFAMILY Ribosomal protein S6 111 215 IPR035980 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)|GO:0019843(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0240 K02990 - - vvi:100244408 239.965
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0240 Cone-Chr12:1295881 Cone8ag0235 Cone-Chr8:1346759 1.82E-127 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g185 Blo02g01162 . . . . Bpe07g00059 . . . . Cma02g00919 . Car02g00669 Car15g01252 . . . . . . . . . . . . . . . . . Cone8ag0235 Cone12ag0240 . . . . . . . . . . . . . Bma12g00618 . Cmo02g00927 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012141 0 1 2 1 1 1 2 1 0 1 1 1 1 1 1 2 0 2 2 0 1 1 1 1 0 1 1 1 1 1 30